Conserved Protein Domain Family
GIY-YIG_AtGrxS16_like

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cd10450: GIY-YIG_AtGrxS16_like 
GIY-YIG domain found in CAXIP1-like proteins, iron-sulfur cluster assembly proteins, and similar proteins
The family includes CAX-interacting protein-1 (CXIP1)-like proteins and iron-sulfur cluster assembly proteins, both of which contain a GIY-YIG domain that shows statistically significant similarity to the N-terminal catalytic domains of GIY-YIG family of intron-encoded homing endonuclease I-TevI and catalytic GIY-YIG domain of nucleotide excision repair endonuclease UvrC. CAXIP1 is a novel PICOT (protein kinase C-interacting cousin of thioredoxin) domain-containing Arabidopsis protein that activates H+/Ca2+ exchanger CAX1, and its homolog CAX4, but not CAX2 or CAX3. Iron-sulfur cluster assembly proteins in this family also contain a C-terminal NifU-like domain that corresponds to a common region between the NifU protein from nitrogen-fixing bacteria and rhodobacterial species. The biochemical function of NifU is unknown.
Statistics
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PSSM-Id: 198397
Aligned: 18 rows
Threshold Bit Score: 83.4945
Created: 20-Oct-2010
Updated: 2-Oct-2020
Structure
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Aligned Rows:
 
GIY-YIG
Feature 1:GIY-YIG motif/motif A
Evidence:
  • Comment:consensus: GIYX(10,11)YIG used to define GIY-YIG nuclease superfamily.
  • Comment:Some members in this family have a variant GIY-YIG domain with FXG instead of the YIG motif.

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1        ###          ###                                                           
Q8H7F6        88 GVYAVYDksdeLQFVGISRNIAASVSAHLKsvp-elCGSVKVGIVEEPdKAVLTQAWKLWIEEHikvtgkVPPGN 161 thale cress
BAB75695      34 GVYAIFDqektLQFVGYSRDVYLSLRQHLVrql-qhCYWVKVQTIERPsRTVLENIEKAWIAENg----tTPVGN 103 Nostoc sp. PCC 7120
NP_440492     32 GVYAIFDqhqnLQYVGYSRNLAISLLQHLVrqp-ehCHGLKVHIIDRPdRQLLVQIQNHWLVGQ------NPPGN 99  Synechocystis sp. PC...
XP_001769426 141 SLYAIFDenktLCFIGISRQVYQSMRLHFArrp-lqCYYVKVMHVSKPsRALLEGTRDAWISENg----sVPVGN 210 Physcomitrella paten...
NP_682372     32 GLYAIFDaagsVQYIGYSRDMRLSLLQHLVrcp-qgCSGYKAIAIERPdRPWLETVKQQWLAELg----tVPLGN 101 Thermosynechococcus ...
XP_001695909 114 AVYAIYDekqkLQYVGTTTDLRNALRAALGrrp-ekTHYYKAAHLPTAdTPALQAVRDAWFSECg----gQPNGN 183 Chlamydomonas reinha...
XP_002970083 194 TIFAVIDnnnrVQYIGFSKDIRNSLRTLIGrrp-elCHFYKVFHLPVLdQQKMLAVRQQWVNELg----sIPRGN 263 Selaginella moellend...
CBJ29464     132 AVYAVVGkdekVNFVGVGRNVALSLAAHLAaegesmVHMLKVRSFKFPkRDKMEALKAQWIEECg----sTPVGN 202 Ectocarpus siliculosus
YP_001734384  32 GLYGIFDgsqtLCYVGYSRDVSKSLQQHLIrcp-eqCHWVKIFQCDRPsRTLLEEMRAAWLTENg----tIPPGN 101 Synechococcus sp. PC...
YP_171217     29 GIYAIYDrdrqLQLIHYSRNVSLSLQQHLLrqp-drCYWFRAQRCDRPdRQQLEALQQAWLAEQl----qVPPGN 98  Synechococcus elonga...

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