Conserved Protein Domain Family
SLC6sbd_u1

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cd10334: SLC6sbd_u1 
uncharacterized bacterial and archaeal solute carrier 6 subfamily; solute-binding domain
SLC6 proteins (also called the sodium- and chloride-dependent neurotransmitter transporter family or Na+/Cl--dependent transporter family) include neurotransmitter transporters (NTTs): these are sodium- and chloride-dependent plasma membrane transporters for the monoamine neurotransmitters serotonin (5-hydroxytryptamine), dopamine, and norepinephrine, and the amino acid neurotransmitters GABA and glycine. These NTTs are widely expressed in the mammalian brain, involved in regulating neurotransmitter signaling and homeostasis, and the target of a range of therapeutic drugs for the treatment of psychiatric diseases. Bacterial members of the SLC6 family include the LeuT amino acid transporter.
Statistics
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PSSM-Id: 271366
Aligned: 76 rows
Threshold Bit Score: 535.924
Created: 3-Dec-2008
Updated: 2-Oct-2020
Structure
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Aligned Rows:
 
Feature 1:Na binding site 2 [ion binding site]
Evidence:
  • Comment:based on Aquifex aeolicus LeuT (SLC6) with structure
  • Comment:One of two Na+ binding sites in Aquifex aeolicus LeuT. It binds the Na+ ion designated Na2, and appears conserved in Vibrio parahaemolyticus vSGLT and other SLC5 proteins

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1                       #  #                                                             
NP_244306      2 REQWGTRAGFILAAVGSAVGLGNIWRFPYVAYENGGGAFFIPYLFALLTAGIPLLIMEFTIGQKYRGSAPLSYaRLNKKA 81  Bacillus halodu...
YP_447732      7 SPRWESNISFILAMIGSAVGLGNIWRYPYVAYTNGGGAFILPYIISIICLGIPLLFIEYGTGYKFKSGMSKILrKINTKY 86  Methanosphaera ...
YP_447779     15 AYKWGSNISFLFAMIGAAIGLGNIWRFSYIVYSNGGGSFFIPYIFAILTLGVPFLILEYGLGVKHRDSLSSILkNLNPKF 94  Methanosphaera ...
YP_001273272   6 KSEWNSSLAFLMSMIGAAVGLGNIWRFSYVLYSNGGGSFFIPYFVAIGLLGIPFLILEYGLGFKFKTSFSNLLhKIRPRF 85  Methanobrevibac...
ADC48047       4 QNQWNSRIAFLLSMIGAAVGLGNIWRYSYVVYSNGGGTFFIPYLVAILIMGIPFLVLEYGIGFRHKDSFSNILkSINPKL 83  Methanobrevibac...
ADC46487       4 ENEWGSNLAFVLAMIGSAVGLGNIWRYPYVLYSNGGGAFYIPYLIAILVLAIPLIILEYGVVYNYKSSFTKAIvKIKPKL 83  Methanobrevibac...
ADC47052       4 KAQWDSSLSFIFAMIGAAVGLGNIWRFSYVLYSNGGGSFFIPYFVAIAIMGIPFLILEYGVGFSFKDSFTNILkKIDGRL 83  Methanobrevibac...
ADC45860       4 NAQWNSIITFILAMIGLTIGIGNIWRFSYVLYSNGGGSFFIPYFIAIMVMGIPFLILEYGLGFSLKKSFSKLMhDIRPEF 83  Methanobrevibac...
YP_001274105   5 KNEWGSNISFLLAMIGSAVGLGNIWRFPYVLYSNGGGAFYIPYITAVLILGIPFLILEYGVGYNFKSSFPKAIrSISKKW 84  Methanobrevibac...
YP_001528913   4 REHWKNRSIFIMAAVGSAIGLGNMWRFPYIAAQNGGGAFLIPYMTALLTAGIPLMIIEYGLGIRTQGSAHIALgKIRKPL 83  Desulfococcus o...
Feature 1                                                                                        
NP_244306     82 EWIGWWQVAISFVIATYYAVIIAWAMSYSVFAINLSWGEDTGg----FLFGEYLkldvdpgqigslvPGVFIPLVLVWIV 157 Bacillus halodu...
YP_447732     87 EYIGWFIQTSTFFILTYYVCVVAWNLLYVPLSFFKGWGSNPDn----FLNTVILesttdvsglfhiaIYVLIALTIVWII 162 Methanosphaera ...
YP_447779     95 EVIGWFIVFLVFLVMTYYIVIIGWDVIYLLLGFTKQWGSDPNl----FFNTNIVvggnnlshittivWPTFIIVTLVWIF 170 Methanosphaera ...
YP_001273272  86 EVIGWILGLLAFGVVTYYMVILAWDIVYLGASPFLAWGADPA-----GFFLNYVggdstisdwshliLPTVAGLVIVWVM 160 Methanobrevibac...
ADC48047      84 EYISWALVLIIYFVLIYYLVIVSWDLVYLGSSINFSWGADSAl----YFVQNVGgssnls-nmasfiIPTTISMVLVWIC 158 Methanobrevibac...
ADC46487      84 EFYGWILPVVTFIMTIYYSTILGWDGIYFILSFFKGWGSDPNt----FLTVSLLqsadsisgilnfiPVIAISMIFIWLI 159 Methanobrevibac...
ADC47052      84 EIVAWILILFVFIVVIYYMVILSWDMVYLLTSFTFGWGVDTAa----YFTNTVGgsadla-kggiflIPTTICVVLMWIV 158 Methanobrevibac...
ADC45860      84 EVIAWMLVIFVFIVVIYYMVIIGWDFVYFLNSFSFGWGSDPN-----SFFMTYVggtreisqigrllLPTLICTTVLWII 158 Methanobrevibac...
YP_001274105  85 EYLGWFLPVAIFMILVYYISILGWDGFYVILSAFKGWGADPNn----YFTNTFLqstesvsgiativPIIAISILAGWFI 160 Methanobrevibac...
YP_001528913  84 RFIGWMAILCALFINIYYCIVLGWTWNFLLASPDIAVWGADLaaskaHFFTDILhisegpwqfgtiyPNLLWGLVTTWVV 163 Desulfococcus o...
Feature 1                                                                                        
NP_244306    158 ALGVlfaGVKKGIELANRIFIPTLVIMFLIIVIRAVTLEGAAIGLDAFFKPDWSEILSPGVWVAAYGQIFFSLSIAFAIM 237 Bacillus halodu...
YP_447732    163 LWYIshhDINKGIGKFNKILTPLLFIIMIIIVAFALTLPGSGFGVLTLLTPDLSAITNSDIWIAALSQILFSLSIGMCIV 242 Methanosphaera ...
YP_447779    171 LWLVsrkNIENGIGKVVKITIPSLICIMFLIVAYSFTLNGHMIGLTNLFNPDWSALLNSDIWLAAFTQVLFSLSVGQSIA 250 Methanosphaera ...
YP_001273272 161 IWFIskkELNSGIGKVSKVLIPLLFVIMAAIVIFSLTLPGHNLGIETLLTPDWSVLFDVNIWLAAFSQIIFSLSLGMAIA 240 Methanobrevibac...
ADC48047     159 VWYIshkDLNEGIGKASKILIPLLFGIMAFIIVFALTLPGAGIGISALLNPDWQMLLNVNIWLAAFSQIIFSLSMGESIS 238 Methanobrevibac...
ADC46487     160 IWFIshrNLDEGLGRVARYFVPMLFVIMIVIVAFSLTLPGASIGLAELFDPDWSLLYNYSIWMAAFGQIFFSLSLGMGAG 239 Methanobrevibac...
ADC47052     159 LWFIshrDVDKGIGKVSKVLIPSLFVIMGIIVFYSITLPGHMIGIDALLRPNWRMLLDVNIWLAAFAQIIFSLSMGQAIA 238 Methanobrevibac...
ADC45860     159 FWFVsnrDVDEGIGKISTILMPLLFIIMIFIFLYSFTLPGFDIGIKTLLKPNWSLLLDIHIWLAAFGQTIFTLSIGQAMV 238 Methanobrevibac...
YP_001274105 161 LWFIshrNLEDGIGRVSKALVPLLFIIMIGIVIFSLTLPGAGIGLSQLFNPDWSLLGDFNIWMAAFGQIIFSLSLGMCIA 240 Methanobrevibac...
YP_001528913 164 IWAIi-rSGLSGIGKVLLFTVPLPVILVLILLVRGLTLEGSATGLNHYLTPDWGRLTDYHVWLAAYGQIFFSLSVGFGTM 242 Desulfococcus o...
Feature 1                                                                                        
NP_244306    238 ITYSSYLprkADVNNNAFIAGFSNSGFELLAGIGVFAVLGFMATQAGTTVgeVAAGGIGLAFVVFPQIINslpglNGLFG 317 Bacillus halodu...
YP_447732    243 VAYTAYLpddVNIPKNVLLVALANSSFEVFTAIGIFGILGFMSTTHGIPIneLVTQGTTLAFVAFPQIFNvmgfiGYIIG 322 Methanosphaera ...
YP_447779    251 LTYASYLdnnDHLVDSVLVVAASNSSFEIITAIGVFNILGFMSLKTGLGIeqIATSGTGLIFVVFPEIFNimgdvAYIIG 330 Methanosphaera ...
YP_001273272 241 LTYASYLpedSKLINNVLIVVSSNSGFEIFTAFGVFSILGFMSVTSGVPIesLIRQGTGLVFIVFPTIFNtmgiaGKILG 320 Methanobrevibac...
ADC48047     239 LTYASYLpegSKLTDNVLIVVFANCAFEVCTAFGIFSILGYMSYTSGTPIveLVSEGTGLVFVVFPMIFNimgaiGHIIA 318 Methanobrevibac...
ADC46487     240 FTFASYTkrdIDLISSGLCVVLANSLFENFAALGVFSILGYMSLESGVAVskLVSQGTTLIFVAYPKVFNilggvALILG 319 Methanobrevibac...
ADC47052     239 LTYASYLpesSRLTDNVLIVVASNSLFEIFTAFGVFSILGYMSLNSGMALnkLVTEGTGLVFIVFPMIFNvmgtvGRVLA 318 Methanobrevibac...
ADC45860     239 YTYASYLprnSKLVDEVLLVVITNTLYEVFIAIGVFSILGYMSLKSSIPIekLISEGTGLIFVVFPKIFSemgfvGQIIG 318 Methanobrevibac...
YP_001274105 241 FTYASYAqddSDLVSNVLYVAVANCGFENFAAIGVFSILGYMSLQSGVAVpdLVTQGTGLVFIVYPEVFNvlggiANIIG 320 Methanobrevibac...
YP_001528913 243 IAYASFMpedTELPNSAAITSFSNCCFSFLAGLAVFSVLGYFAVATNVPMteVSQAGPGLAFIVYPAALAklpvyVTFFG 322 Desulfococcus o...
Feature 1                 #  ##                                                                  
NP_244306    318 FLFFASLVFAGLSSLISIVETFVSALQDKFkisRTKAVLFGGGLSALISLLFAtqgGLFLLDAADHFINSFGVALAGLVS 397 Bacillus halodu...
YP_447732    323 PLFFIALLFAGITSNISIMEPIILSLRDKFgfeRKKAVTICCVVGFIISLLFTtslGSSLVGVFDTFINQFGVVLNVIIE 402 Methanosphaera ...
YP_447779    331 PAFFLCVFFAGVTTMFAFIEPMSLSLAKKFkmsRSKTATIVCFFGFLTSIIFTtgaGNYILAIADEFINQYGILFAILLQ 410 Methanosphaera ...
YP_001273272 321 PLFFLAILFAGITSALGFLEPLLNSVCDKFgftRKKSASILCGVGFVISMFFTcgiSSYLVEIVDGFLNQFGILFLIALQ 400 Methanobrevibac...
ADC48047     319 PLLFIAILFAGITSAVAVFEPMINSTVHKLnwsRKKAVTVWSIVGCIVSLLFTtgiSSYLVGIVDSFITEFCILLLIAIQ 398 Methanobrevibac...
ADC46487     320 PLFFFTVYVAGVTSILSSFEVLSISIQDKFafsRKKATTALCIVGGLASMVFAtsaGGYLLSIADIFVNNIMVLFSVIVQ 399 Methanobrevibac...
ADC47052     319 PLLFLAILFAGITSALGFFEPMLSSASSKFnlsRKRTATILSIIGCAFSILLTtgiSSYLVGVIDSFVNQFGILLLIGVQ 398 Methanobrevibac...
ADC45860     319 PLLFLSILFAGFTSALALFEPFLSSLCDKFnlsRRKGVTILVIVAVICSIPFStgiSSYLVGIVDKFVNDFGILILIGVQ 398 Methanobrevibac...
YP_001274105 321 PLFFFTVYLAGITSVLALLEPVSVSIQNKFdwtRNKTVTVLCIVGGACSMIYAtamGSYILGIADTFLNQIALLIGVICE 400 Methanobrevibac...
YP_001528913 323 ALFLITLLLLGIDSAFSLLETVSAALSDKFgitRSVSTTITAVFSFLAGLPLAtgaGIYWLDIMDHFIMSYAITTVAIVE 402 Desulfococcus o...
Feature 1                                                                                        
NP_244306    398 VVAVSWFFKQLNPlQKHGNEVSDLr-TGTWWKVCLGVITPIVLGYMAVQNIIn-SISENYe-GYPTSFLLYSGWGVAVGA 474 Bacillus halodu...
YP_447732    403 LILITWIYGIDKI-LPGINKNATFlkIGPKWKIWMKYIIPIIIFIIWIKGISesLITNDTf-TNTVQLLLLVALFIVPLI 480 Methanosphaera ...
YP_447779    411 AIIFGWLYGIDKL-VPILNEKSIVhiGSKWIWILKYILPGVLLILFASEIIHk-ITEGITt-ELLIELVFLALVIIIPVI 487 Methanosphaera ...
YP_001273272 401 CIIFGWILGIDDL-IEVVNKDSVMh-VGKLWVAIIKYILPCVIFIVWTFGIIdlIKTGGFl-ELAVDVVITLSILIASVM 477 Methanobrevibac...
ADC48047     399 SIIFTWFYDIEGV-IPILNENDRVk-VGKTWVFVLKYILPILLFFMWASGVYhlLLNANTf-ELIVYGLITVFIIILTYV 475 Methanobrevibac...
ADC46487     400 TILFAWVFKAERL-VDFFNAKSRFlkLGRWWLILVKYICPILLTVIWIGELYn-LIKMGSteFVVILGVLLAILLIFAFI 477 Methanobrevibac...
ADC47052     399 CIIFAWVYGIDHF-IPVLNENGILk-VGKIWKFIIKYLLPVVLFVIWAYGIFt-LFTTAKtfEIMVDIIIIVAVLILSFI 475 Methanobrevibac...
ADC45860     399 AIIFGWFYGVEKV-MPVLNELSTFk-VGKSWVFTIKYLLPVLIIIIWVNGVVg-LFSNTNsfELIVDLIITFVVVGFSVL 475 Methanobrevibac...
YP_001274105 401 CILFAWIFDAGKI-IPSLNKNSKTlkIGKWWIVAVKYIIPIVLGFVWIGGLFgvISSGSFv-ELSILAILTVILIGFTVI 478 Methanobrevibac...
YP_001528913 403 CLAVGWILGAKNF-AAEVNRTAEIk-IGPIFSFIIRFLTPAILGYSVIRTFVd-EMQAPYe-GYPPSAVFAIGLGTLALI 478 Desulfococcus o...
Feature 1                
NP_244306    475 IIVGFILS 482 Bacillus halodurans C-125
YP_447732    481 LTKIPAKV 488 Methanosphaera stadtmanae DSM 3091
YP_447779    488 LTKLPETK 495 Methanosphaera stadtmanae DSM 3091
YP_001273272 478 LTKFEDYK 485 Methanobrevibacter smithii ATCC 35061
ADC48047     476 FTNIPEKS 483 Methanobrevibacter ruminantium M1
ADC46487     478 FTIRPAKT 485 Methanobrevibacter ruminantium M1
ADC47052     476 LSHLNPRG 483 Methanobrevibacter ruminantium M1
ADC45860     476 FTKLGVKE 483 Methanobrevibacter ruminantium M1
YP_001274105 479 LKKLPAKS 486 Methanobrevibacter smithii ATCC 35061
YP_001528913 479 VIIGAVLT 486 Desulfococcus oleovorans Hxd3

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