Conserved Protein Domain Family
SLC5sbd_YidK

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cd10328: SLC5sbd_YidK 
uncharacterized SLC5 subfamily, Escherichia coli YidK-like; solute binding domain
Uncharacterized subfamily of the solute binding domain of the solute carrier 5 (SLC5) transporter family (also called the sodium/glucose cotransporter family or solute sodium symporter family) that co-transports Na+ with sugars, amino acids, inorganic ions or vitamins. One member of the SLC5 family, human SGLT3, has been characterized as a glucose sensor and not a transporter. This subfamily includes the uncharacterized Escherichia coli YidK protein, and belongs to the solute carrier 5 (SLC5) transporter family.
Statistics
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PSSM-Id: 271362
Aligned: 40 rows
Threshold Bit Score: 462.391
Created: 22-Dec-2008
Updated: 2-Oct-2020
Structure
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Aligned Rows:
 
Na binding site
Feature 1:Na binding site [ion binding site]
Evidence:
  • Comment:based on the structures of Vibrio parahaemolyticus vSGLT (SLC5), Aquifex aeolicus LeuT (SLC6), and the NCS1, Microbacterium liquefaciens Mhp1, bound with Na+, functional studies of Escherichia coli PutP (SLC5) and mammalian NIS (SLC5), and mutational analysis of vSGLT
  • Comment:one of two Na+ binding sites in Aquifex aeolicus LeuT, where it is referred to as the Na binding site 2

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1                                                        #  #                            
NP_312647      9 FVGFTLLVAIITWWKvr----ktDTGSQQGYFLAGRsLKAPVIAASLMLTNLSTEQLVGLSGQAYKSgmsvmgWEVTSAV 84  Escherichia col...
YP_001475751  10 FFGLTATVGLITYLKcrn--ikrDNSDSRDYFLAGGgLSWVVVAGSLMMTNISAEQIVGMNGAQALLva---wWEIAAAV 84  Shewanella sedi...
EAW28244      13 CLAFMALVGYISYQKtk-----gEVNTQDGYFLAGRgLTGTFIAGSMILTNLSAEQLIGLNGSAYGYnlssmaWEVTAGI 87  Alteromonadales...
EDL65215      12 CLFFMGLVAWISYIKtk-----gSVNDSDGYFLAGRgLTGTFIAGSLLLTNLSAEQLVGLNGQAFRTnltnmaWEVTAAF 86  Bacillus sp. SG-1
EHM37518      15 FVLFLFIVALYSYRKtr----giSESGVDGFFLAGRgLSGYFIAGSLLLSNLSAEQLVGLNGNAYRFdisgmaWESTAAI 90  Hafnia alvei AT...
EFY06787       7 CVAFMAFVAWYSWYKtr-----gTIETSAGYFLAGNtLGPVFIAGSLLLTNISTEQLVGQSGLAYFGnmtplaWEVWAIR 81  Succinatimonas ...
EEQ59607      11 FILFTALVGVISAKIvkg---gdDQKTAKGYFLAGSgLGGTFIAGSMLLTNLSAENLVGLSGQSYAAnmsgmaWEATAVI 87  Clostridiales b...
GAA59218      11 FVFVTALIGGLTYWKcrgqnrnnGQSQTKEYFLAGGgLTWMFVAGSITLTNLSTDQLVGMNGNQMALlv---wWELAAII 87  Pseudoalteromon...
EAQ96010       8 FAAITVAIAVFTYLQcrk--aprSGDDNAEYFLAGRtLSWYFIAGSITLTNLSTDQLVGMNGNQMLLla---wWELAAVV 82  Congregibacter ...
ABC62796      10 FVGLMALLAAMTWRKvaaaraasHASADREIFLAGGgLSWFFVAGAITLTNLSTDQLVGMNGNQMLLla---wWELAGFV 86  Erythrobacter l...
Feature 1                                                                                        
NP_312647     85 TLIFLALIFLPRYLKRGIATIPDFLEERYDk-TTRMIIDFCFLIATGVCFLPIVLYSGALALNSLFHVGeslqishgaaI 163 Escherichia col...
YP_001475751  85 GLIILAKWLIPIYYKYNCTTTTELLERKYNdkGIRAMVSVLFMLGYAFILLPVVLYTGSLFMKSMFGLQi--------pV 156 Shewanella sedi...
EAW28244      88 STIIMALIFLPRYLAGAFSTLPEFLRDRFDd-TVRRMTVILFMVGYCFITIPSVLYSGSIAVLRLFDVPalldmsyqasL 166 Alteromonadales...
EDL65215      87 AIIIMALYLLPKYLGRSFTTLPEFLSQRYDe-GVRKYTVVLFMLGYVFVTIPSMLYSGALAVLKLFDVPdllgisytqsV 165 Bacillus sp. SG-1
EHM37518      91 AIIAMALFFLPRFLRRGITTMPQFLEERFDi-TTRRMVSIMLLVGYAVMANPCSLYLGAITMDELFDFQqmtalstqssI 169 Hafnia alvei AT...
EFY06787      82 GIILLAILFLPMYLGGAFSTIPEFLKNHYGe-GTRKIIVYLFMFGYIFVWSPTVLYGGALALMKILNIEqalgitrmeaL 160 Succinatimonas ...
EEQ59607      88 ATIVMAFVFLPLYLRKGYTTLPEFMEERYGi-FVRRMVSLFFLVGYLLIGIPVCLYAGAIGFNQIFDLSsifgissqtaL 166 Clostridiales b...
GAA59218      88 GLIILAKVFIPVYYKYNCTTTTELLEKRYNnkHIRAVIGGLFFLGNALIYMPAVIYSGALFMQTMFKVDi--------pL 159 Pseudoalteromon...
EAQ96010      83 GLLILAFVFVPIYYRYNCATTTELLEKRYGkqSLRSLVSILFLLGNVFLYLPIMLYTGSLFLKSMFGLEa--------sT 154 Congregibacter ...
ABC62796      87 GLLLLAFVFVPIYYRNNCTTITQLLEQRYEggSIRTVISGLFLLGNFAIYLPAVIYSGALFMQTLFGVEa--------sI 158 Erythrobacter l...
Feature 1                                                                                        
NP_312647    164 WLLVILLGLAGILYAVIGGLRAMAVADSINGIGLVIGGLMVPVFGLIAmgkgs----fmqgIEQITTVHAEK-LNSVGgp 238 Escherichia col...
YP_001475751 157 TLLAIIFAVVGAVYAIFGGLRAIAISDSLNGVGLILMGVVVSFLAMNAv------------NWDLSGVPIER-ITLIGdd 223 Shewanella sedi...
EAW28244     167 IVTIIIVGSVGALYAVFGGLKAVAVSDTINGVGLLIIGILVPTLGLIAlgdgs----fadgLSTLVNTDTEK-LNAIGse 241 Alteromonadales...
EDL65215     166 WLVIWVIGIIGAIYAIFGGLKAVAVSDTINGIGLLIIGFLVPVLGFFAlgdgn----fvggIKEIATTNPEK-LNSIGts 240 Bacillus sp. SG-1
EHM37518     170 AVLSLAMGAIGGIYATAGGLKAVAVSDTISGVILLVAALLIPILGLVAlgdga----lwdgARKLIADHPEQ-FNAIGdk 244 Hafnia alvei AT...
EFY06787     161 WLMTVIVGVVGAIYAVAGGLRAVAISDTLNGYGLLIIGCLIPILGLVAlgnkid-ggitdaLHFIATHHPEK-LDAIGlg 238 Succinatimonas ...
EEQ59607     167 TILIVLVGIIGALYAVLGGLKAVAVSDTINGVLLVGGSLLVVIFGFIAvgnakadggfaagVNYVLDNNYMQ-LNAIGgk 245 Clostridiales b...
GAA59218     160 MYIATAFAIIGAVYAFFGGLRAVAVSDTYNGILVLGMAVLVVFLALNA-------------IDYDFTGIPEErLTLIGda 226 Pseudoalteromon...
EAQ96010     155 LTIACALAALGSSYAIFGGLRAVAVSDTLSGIGLLSLSLVVVWLSLDA-------------INFDFSGIPADrLTMIGga 221 Congregibacter ...
ABC62796     159 VTVAAVFAVVGAAYAILGGLRAVAVLDTYAGVGILLLALVVVFLAMQAv------------GWDITTGVPEErLTMIGsl 226 Erythrobacter l...
Feature 1                                                                                        
NP_312647    239 t--dpLPIGAAFTGLILVNTFYWCTNQGIVQRTLASKsLAEG-QKGALLTAVLKMLDPLVLVLPGLIAFHLYqdl--pka 313 Escherichia col...
YP_001475751 224 q--sdIPWHTLLTGMIFIQIFYWGTNMVITQRALAAKsVKEA-QKGLYAAVIMKLIVPIIVVLPGIVAFKLYgd----vg 296 Shewanella sedi...
EAW28244     242 d--dpVPFGTIFTGMILANLFYWGTNQYVIQRTLGAKnLVEG-QKGVLFSGYFKVLVPFMMMIPGVIAYHLYkheslqti 318 Alteromonadales...
EDL65215     241 e--dsVPFSTIFTGMIFANLFYWATNQYVIQRTLGAKnLAEG-QKGVIFSGFYKLLVPFMMMIPGVIAFHLYgdsl-rsv 316 Bacillus sp. SG-1
EHM37518     245 n--asVPFSTIFTGMLCANLFYWCTNQMIIQRALGARsLAES-QKGVLLAGIIKLLVPIVMVLPGLIAFNLFggtl-sha 320 Hafnia alvei AT...
EFY06787     239 seldaIPIAAVFTGLMVTATFYWGTNQFVIQRALGARsLKAG-QQGLLFAGFFKFLVPFIAIFPGLIAYHLYgegl-dpr 316 Succinatimonas ...
EEQ59607     246 n--dpVPFACIFTGMVLANLFYWGTNQVLIQRALGAKnLKEG-QKGVLISGFLKMMVPMLLVLPGVIAAALVgtgl-esk 321 Clostridiales b...
GAA59218     227 d--spIPWPTLLTGMIFIQMYYWGTNQTITQRAMAAPnVKEAqKGIFAAAGIRFLIVPAIVVLPGIISFKLYgd----ig 300 Pseudoalteromon...
EAQ96010     222 d--spIPWTTLFTGMLFIQIFYWSTNQTITQRAMAAPsVREAqKGVLAAAAIRLLIVPAIIVIPGICAYKLYgd----ig 295 Congregibacter ...
ABC62796     227 d--spIPFHTLFTGMLFIQIFYWSTNQNITQKALAAPnVKEAqKGVVAAAIIRVLIVPPIVVIPGIVAFKLFgd----vd 300 Erythrobacter l...
Feature 1                                  #  ##                                                 
NP_312647    314 DMAYPTLVNNVLPvpLVGFFGAVLFGAVISTFNGFLNSASTLFSMGIYrriinqnaepqqlvTVGRKFGFFIAIVSVLVA 393 Escherichia col...
YP_001475751 297 DVAYGRLVGDILPpwLSGAFAAVIAGAVLSSFNSCLNSAAALYTCDIHqnyvnp---nadvrKIGTRVALVFTLISVGLV 373 Shewanella sedi...
EAW28244     319 DLAYPHLVKDVLPqyLSGFFLAVLLGAVFSSFNSLLNSAATLFCLDVYkpmkkdkvsdekliKVAKITSIVIAVLSFITA 398 Alteromonadales...
EDL65215     317 DLAYPTLIANILPsyLTGFFLAVLLGAVLSSFNSLLNSAATLFALDIYkplfnkdandqqliSVSKKFGILLAVISMTIS 396 Bacillus sp. SG-1
EHM37518     321 DFAYPALVKAVLPwwLTGMFAAAIFGTVTSHFNSIINSSATLFVIDLYgpisgck-dekklvRVGKIASILFSLVSVVIA 399 Hafnia alvei AT...
EFY06787     317 DIAYPTLVADILPapLLGLFVAVLLGAVFSTYNSLLNSAATLFAVDIYkpfinpkaddskviRISQIFGIICSVFTIGIA 396 Succinatimonas ...
EEQ59607     322 DFAYPTLVARSLPwpVVGLFCAALFGSVISTYNSFLNAASTVFMVDIYkpifnpglsdektvVYAKRIGWGFAAFAICFT 401 Clostridiales b...
GAA59218     301 DAAYGRIVGDVMPawLTGVFAAAMAAAVLSTYNSLLNSATALYVCDIHeayfnk---epsvvKLSGYVTLLLTSLTLVLV 377 Pseudoalteromon...
EAQ96010     296 DATFGTLVGDLLPgwLSGTFAAMMVAAVLTSFNSVLNSSSTLYVIDLHepyvnk---ganvhRLNIWVSIAFVACALLLV 372 Congregibacter ...
ABC62796     301 DRAYAMVVGEVLPswTSGMFAAMIAAAVLTTYSAVMNATITLWSVDFHrrfinp---dvdvrRLNRLVGVLAMLVSIALV 377 Erythrobacter l...
Feature 1                                                                                        
NP_312647    394 PWIanapqgLYSWMKQLNGIYNVPLVTIIIMGFFFLrip--alAAKVAMGIGIISYITInyl----------------vk 455 Escherichia col...
YP_001475751 374 PIFaks-esIISLLQQLNGLYSMPVLAAFICALVFKnvh--anAIKLGLIFGVLIYAIFtfi-----------------w 433 Shewanella sedi...
EAW28244     399 PLLmfapegLWHIIRVFTGFYNIPVITIVLVGLFTRkvp--alGAKVAIIFHVIAYTLLkfv----------------wd 460 Alteromonadales...
EDL65215     397 PMLinategLWDLIRRFTGFFNIPIVVILLVGVLSKrip--svAAKTVIIFHVITYYMLvwgtnh----------llgfe 464 Bacillus sp. SG-1
EHM37518     400 PLLlntpngIFDLMRRFTGFYSVPIIAIVLVGFLTRrvp--acAAKFTLIFHIIAYGIYtfagl-------------dks 464 Hafnia alvei AT...
EFY06787     397 PFLvyapngLFIFLQQFTGFIAIPIVCLVLIGLFAKhihvpgvAAKITIIGHIIAYYLLvfqf--------------ndl 462 Succinatimonas ...
EEQ59607     402 PFLqvlstgLYDFGRSFTGFYNIPIITLVLIGMFSKkgs--slGAVAASIWHVFFYSGYkfwfkyid------mpftnav 473 Clostridiales b...
GAA59218     378 PIYqqa-dsIINLLQQLNGLLSMPIFSIFVVGLLFKnvd--arAGIAAVILGVVMYGMLtfans-------------plh 441 Pseudoalteromon...
EAQ96010     373 PIYdga-esIINLVQQLNGLLSMPILSVFIVGLVFRgva--agAAGIALVSGVALYAVFsfv-----------------w 432 Congregibacter ...
ABC62796     378 PIYaga-esIINLLQELNGLLSMPILSAFIAALLFRnmd--arAAVAGLVWGFSIYAFHtfylyvpenfggvswyatigl 454 Erythrobacter l...
Feature 1                                
NP_312647    456 fDFHFLYVLACTFCINVVVMLVIG 479 Escherichia coli O157:H7 str. Sakai
YP_001475751 434 sPFHFIHMMAITLAATITVTLLLS 457 Shewanella sediminis HAW-EB3
EAW28244     461 vDINFIHIYAILFFIELAIMLGIG 484 Alteromonadales bacterium TW-7
EDL65215     465 lGINFIHVYGILFVIEVLMMIVIG 488 Bacillus sp. SG-1
EHM37518     465 lSLHFIHVMGILFVLEVGMMLILG 488 Hafnia alvei ATCC 51873
EFY06787     463 vKIHWMHVYGILFCIELAILVIWG 486 Succinatimonas hippei YIT 12066
EEQ59607     474 lGINYMHIYAISFVIMLVIIFVCA 497 Clostridiales bacterium 1_7_47_FAA
GAA59218     442 tDIHYIHLMPITLIVCVAFALIVN 465 Pseudoalteromonas sp. BSi20652
EAQ96010     433 tPIHYIHLMAITLFFCIAIALIAN 456 Congregibacter litoralis KT71
ABC62796     455 pWVHYIDVMVFVLFSSVAVALLTN 478 Erythrobacter litoralis HTCC2594

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