2JLO,2JLN


Conserved Protein Domain Family
SLC-NCS1sbd

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cd10323: SLC-NCS1sbd 
Click on image for an interactive view with Cn3D
nucleobase-cation-symport-1 (NCS1) transporters; solute-binding domain
NCS1s are essential components of salvage pathways for nucleobases and related metabolites; their known substrates include allantoin, uracil, thiamine, and nicotinamide riboside. This family includes Microbacterium liquefaciens Mhp1, a transporter that mediates the uptake of indolyl methyl- and benzyl-hydantoins as part of a metabolic salvage pathway for their conversion to amino acids. It also includes various Saccharomyces cerevisiae transporters: Fcy21p (Purine-cytosine permease), vitamin B6 transporter Tpn1, nicotinamide riboside transporter 1 (Nrt1p, also called Thi71p), Dal4p (allantoin permease), Fui1p (uridine permease), and Fur4p (uracil permease). Mhp1 has 12 transmembrane (TM) helices (an inverted topology repeat: TMs1-5 and TMs6-10, and TMs11-12; TMs numbered to conform to the solute carrier 6 family Aquifex aeolicus LeuT). NCS1s belong to a superfamily which also contains the solute carrier 5 family sodium/glucose transporters (SLC5s), and SLC6 neurotransmitter transporters.
Statistics
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PSSM-Id: 271358
Aligned: 20 rows
Threshold Bit Score: 278.01
Created: 7-Nov-2008
Updated: 2-Oct-2020
Structure
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Program:
Drawing:
Aligned Rows:
 
Na binding sitesubstrate
Conserved site includes 5 residues -Click on image for an interactive view with Cn3D
Feature 1:Na binding site [ion binding site]
Evidence:
  • Comment:based on the structures of Vibrio parahaemolyticus vSGLT (SLC5), Aquifex aeolicus LeuT (SLC6), and the NCS1, Microbacterium liquefaciens Mhp1, bound with Na+, functional studies of Escherichia coli PutP (SLC5) and mammalian NIS (SLC5), and mutational analysis of vSGLT
  • Comment:one of two Na+ binding sites in Aquifex aeolicus LeuT, where it is referred to as the Na binding site 2
  • Structure:2JLN: Microbacterium liquefaciens Mhp1 (in an outward-facing open conformation) binds Na+, contacts at 4.0A
  • Comment:Mhp1 may have a flexible cation specificity

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1                    #  #                                                                
2JLO_A        26 SVGPFSLAAIWFAMAIQVAIFIAAGQMTSSFqvw----qvIVAIAAGCTIAVILLFFTQSAAIRWGInFTVAARMPFGi- 100 Microbacterium ...
Q04895       112 CWSWFNYLYFWLADCFNINTWQIAGTGLQLGlnw---wqcWLTVWIGYTFAGIFVVLNSRFGSAYHLsFPITVRASFGi- 187 baker's yeast
2JLN_A        26 SVGPFSLAAIWFAMAIQVAIFIAAGQMTSSFqvw----qvIVAIAAGCTIAVILLFFTQSAAIRWGInFTVAARMPFGi- 100 Microbacterium ...
P75712        26 TWKTFNYFTLWMGSVHNVPNYVMVGGFFILGlst---fsiMLAIILSAFFIAAVMVLNGAAGSKYGVpFAMILRASYGvr 102 Escherichia col...
CAJ97263      60 TWGTYNIFAFWMSDVHSVGGYITAGSLFALGlts---wqvLVSLLVGILIVQYFCNLVAKPSQVTGTpYPVICRASFGv- 135 Ralstonia eutro...
YP_001397830  21 TIGFLTFIWMWISMAVIIATFSLGETGIKSLalw----evIGLIFLANVAIAIVMVLVADIGTEHGLsFSVYLRAPFGi- 95  Campylobacter j...
EEA93219      31 AISNRGYIGLWISMAVIIATFQLGAGGVAGLplp----ivIATIFFANLLLGIVMAMTADIGTEHGIsFAVYLRAPFGt- 105 Pseudovibrio sp...
ABL14246      38 KIGIRGFFAMWVGMAILLATFDIGASGVRSIslp----wvVLATLIGCIAIGIFISVVGDIGVEHGLsFPVYMRAPFGt- 112 Bacillus fordii
EEY71841      34 TISFWGFIAIWIGMAVIIATFSLGAGGVSGMple----hvLLTIFLANLTLGIVMTLTADIGTEHGLsFAVYLRAPFGt- 108 Grimontia holli...
EEX70126      38 KLNPWNYMSMWLGDGVNLGNMTLGGSLVVAGtammniyqtLAAAFIAIAIISVIFSLNDSFGYKTGIpYVMQLRMSFGa- 116 Mitsuokella mul...
Feature 1                                                                                        
2JLO_A       101 RGSLIPITLKALLSLFWFGFQTWLGALALDEITRLltg----------------ftnLPLWIVIFGAIQVVTt------- 157 Microbacterium ...
Q04895       188 FFSMWPIINRVVMAIVWYAVQAWLGATPVALMLKSifgknledripnhfgspnsttfEFMCFFIFWVVSIPFvl------ 261 baker's yeast
2JLN_A       101 RGSLIPITLKALLSLFWFGFQTWLGALALDEITRLltg----------------ftnLPLWIVIFGAIQVVTt------- 157 Microbacterium ...
P75712       103 GALFPGLLRGGIAAIMWFGLQCYAGSLACLILIGK----------------------IWPGFLTLGGDFTLLglslpgli 160 Escherichia col...
CAJ97263     136 LGANIPAVIRGLIAVAWYGIQTYLASSAFLVLALHffpalapyadvklhgfaglstlGWAAFMVLWVLQALVf------- 208 Ralstonia eutro...
YP_001397830  96 KGTHLPSIARGIGASIWFGIQTYLGALALNGISEYlfs----------------fnnWFIWYIIFAAVQIISt------- 152 Campylobacter j...
EEA93219     106 VGTHIPSITRGIVAAIWFGIQTYLGALALNGIFSYltg----------------fdnWVVWYIGFAVLQVINt------- 162 Pseudovibrio sp...
ABL14246     113 IGTHIPSITRAVTASFWFGLNTYFGSTAINSIIHTinpg---------------fdnWLLCYFIFALVQLINt------- 170 Bacillus fordii
EEY71841     109 FGTHLPAVSRGVVAAIWFGIQTYLGALALNGIFEYltg----------------ftnWYFWYGIFGIVQIINt------- 165 Grimontia holli...
EEX70126     117 KGSIISSLLRGIPAIVWYGFQSWIGATALNEILKIvag----------------idqQFMCFIVMQAVQIVLs------- 173 Mitsuokella mul...
Feature 1                                                                                        
2JLO_A       158 -------------fYGITFIRWMNVFASPVLLAMGVYMVYLMLDGad-vsLGEVMSMGGenp------gmpFSTAIMIFV 217 Microbacterium ...
Q04895       262 -------------vAPHKIRHLFTVKAALIPFAAFGFLIWALKKShgkieLGTLNDYSPhgse----fswiFVRSLMACV 324 baker's yeast
2JLN_A       158 -------------fYGITFIRWMNVFASPVLLAMGVYMVYLMLDGad-vsLGEVMSMGGenp------gmpFSTAIMIFV 217 Microbacterium ...
P75712       161 tflifwlvnvgigfGGGKVLNKFTAILNPCIYIVFGGMAIWAISLv---gIGPIFDYIPsgiqkaenggflFLVVINAVV 237 Escherichia col...
CAJ97263     209 -------------wTGMETIRKFIDWAGPAVYVVMIALAIWLVNKa---gWENVNFTLSfvkytgweavpvMLSAIALVV 272 Ralstonia eutro...
YP_001397830 153 -------------gMGIRTIELITSIAAPCIIAVTVWMYFTLDVMaq--tKGINIWSFAgtd------ninLLVFFFANM 211 Campylobacter j...
EEA93219     163 -------------aMGIRAVERLAKIAAPAIMAISVWMYFTLDGLat--aSGKDIWSFAgda------eisIVALFVANM 221 Pseudovibrio sp...
ABL14246     171 -------------aSGIKWVERFADLAAPIIIILSLIIYNTLTADit--eKGKSVWAWAespvtggaaftaFIIVIFANM 235 Bacillus fordii
EEY71841     166 -------------aYGIRAVKTLANLATPAIIAISIWMYYSLDGIak--tKGINIWNFEgke------eisFLVLFVANM 224 Grimontia holli...
EEX70126     174 -------------fFGFKAIKWVESIISVVIMLALLYVFYILLSQhs-aeIVSTWVDAEgtw------gieFFGFIMAFM 233 Mitsuokella mul...
Feature 1                                                                                        
2JLO_A       218 GGWIAVVVSIHDIVKECkvdpnasregqtkadARYATAQWLGMVPASIIFGFIGAASMVLVg------eWNPVIAITEvv 291 Microbacterium ...
Q04895       325 ANFAALIINAPDFGRFAkn------------pQASLWPQLVAIPLFFAITCLIGIIVTAAGyhlygvnyWSPLDVLGQfl 392 baker's yeast
2JLN_A       218 GGWIAVVVSIHDIVKECkvdpnasregqtkadARYATAQWLGMVPASIIFGFIGAASMVLVg------eWNPVIAITEvv 291 Microbacterium ...
P75712       238 AVWAAPAVSASDFTQNAhs------------fREQALGQTLGLVVAYILFAVAGVCIIAGAsihygadtWNVLDIVQRwd 305 Escherichia col...
CAJ97263     273 SYFSGPMLNFGDFSRYAkd------------fKSVKRGNFWGLPVNFLGFSLLTVITTSATlpvfgkliTDPVETVSHid 340 Ralstonia eutro...
YP_001397830 212 SFWSALAIDIPNLTRFLktpsgek--nffkrnKNVFIAQLIALPMTQAWIGAIGAISFIATg------iWNPIEVIQNng 283 Campylobacter j...
EEA93219     222 AFWSSLAVDIPNITRFLkveagtk--sffkrnKNVFLAQFIALPVVQSWIALIGAVSFIAAg------dWNPITVIQGqg 293 Pseudovibrio sp...
ABL14246     236 GFWATLGCDIPTISRFFkaprner--nwfkrnRTNLIGSLIALPLTQTFMIMIGAAALMVAg------tSNPVTALQEta 307 Bacillus fordii
EEY71841     225 SWWSALAVDIPNLTRFLktepgtk--sffkrnRNVFVAQFLALPLTQTWIALIGAASFITTg------dWNPINVIQGqe 296 Grimontia holli...
EEX70126     234 GNYAAIFLSAADYSRELepg---------ishGKRGLLYFCPIALAYGTVLCIGAMLASVTg------iSNPAKAIPMvv 298 Mitsuokella mul...
Feature 1                             #  ##                                                      
2JLO_A       292 gg----vsipMAILFQVFVLLATWSTNPAANLLSPAYTLCSTFPrvftFKTGVIVSAVVGLLMMPWQFAGVln-----tF 362 Microbacterium ...
Q04895       393 ettytrgtraGVFLISFVFALAQLGTNISANSLACGADMTALFPryinIRRGSLFCVAMALCICPWNLMASssk--ftsA 470 baker's yeast
2JLN_A       292 gg----vsipMAILFQVFVLLATWSTNPAANLLSPAYTLCSTFPrvftFKTGVIVSAVVGLLMMPWQFAGVln-----tF 362 Microbacterium ...
P75712       306 s-------lfASFFAVLVILMTTISTNATGNIIPAGYQIAAIAPtkltYKNGVLIASIISLLICPWKLMENqds--iylF 376 Escherichia col...
CAJ97263     341 s-------tfAMLLGAFTFMTATIGINIVANFVSPAFDFSNVSPkhisWRTGGMIAAVASIFITPWNLYNNpav--ihyT 411 Ralstonia eutro...
YP_001397830 284 t-------gfTMVVLLVMVILSQWSTNAPANLIPAALAFINAGApklhYFTAVVISGIAGTIIMPWLILDNlf-----iF 351 Campylobacter j...
EEA93219     294 t-------giTLVVLLVMVVLAQWSTNTSANLIPAALTFVNAGApwitYAMGLVLAAIVGTLAMPWLILDHlf-----tY 361 Pseudovibrio sp...
ABL14246     308 s-------gwMLSMLLLMIVLTQWSTNTAANIVPAAAVFSNVLGpkvsNVIAVFIVGIVGSVIQPWSVYEIlt-----qA 375 Bacillus fordii
EEY71841     297 s-------glGLIVLLLMVVLAQWSTNNSANLIPAALTFVNAAApkmtYKFGVILAGIIGTLSMPWLILNNlf-----tF 364 Grimontia holli...
EEX70126     299 n------npsISVFISAFIVMGAVAVNMVANIVPPTYVTVLLTKv--rYRMAVIITGVLAVCSCPWILVQDssamgltyF 370 Mitsuokella mul...
Feature 1                                                                                        
2JLO_A       363 LNLLASALGPLAGIMISDYFLVRRRRISLHDLYrtkgi----ytywrGVNWVALAVYAVALAVSFLTp---------dLM 429 Microbacterium ...
Q04895       471 LGAYAIFLSSIAGVICADYFVVRRGYVKLTHLFlaqkgsfymfgnkfGANWRAFVAYICGIAPNLPGfigdv--gapkIT 548 baker's yeast
2JLN_A       363 LNLLASALGPLAGIMISDYFLVRRRRISLHDLYrtkgi----ytywrGVNWVALAVYAVALAVSFLTp---------dLM 429 Microbacterium ...
P75712       377 LDIIGGMLGPVIGVMMAHYFVVMRGQINLDELYtapgdy---kyydnGFNLTAFSVTLVAVILSLGGkfihfmeplsrVS 453 Escherichia col...
CAJ97263     412 LDVLGAFIGPLFGILIADYYLVRRQHVDVDDLYtlnprg--rywyrnGFNPAAVATMIPAAIIPILCvvvpawqsaanYS 489 Ralstonia eutro...
YP_001397830 352 LGYYGAVLSGIGGIIVADYYVLRKRRLNVPHLYsyegq----fvfakGFNWAGLIAWAVGGVVAIALp---------sIS 418 Campylobacter j...
EEA93219     362 LGLYGAMLASLGGIMICDYFVIRKRRLNVPELYeeegq----fkyiaGCNPAGLIAWAVGGALAIYAi---------dLS 428 Pseudovibrio sp...
ABL14246     376 LLFIGAILSAISGILIVDYYLLRKRRVNVKDLYrnngq----ykfhgGVNVAGFIAWGIGGIIAIRFm---------dFS 442 Bacillus fordii
EEY71841     365 LGYYGAILSAIAGIIVADYYVIRRRHLNVPDLFnqsgq----fkyikGINPAAYIAWFIGGASALASf---------nYA 431 Grimontia holli...
EEX70126     371 ILIYSAFLGPIVAILLIEYYILRKQEIDIATIYsske-------smpGYNKAAILAMCLGAVAAFLEv---------kLA 434 Mitsuokella mul...
Feature 1                          
2JLO_A       430 FVTGLIAALLLHIPAMRW 447 Microbacterium liquefaciens
Q04895       549 VSEGAMRLYYLGYPVGFF 566 baker's yeast
2JLN_A       430 FVTGLIAALLLHIPAMRW 447 Microbacterium liquefaciens
P75712       454 WFVGVIVAFAAYALLKKR 471 Escherichia coli 53638
CAJ97263     490 WFIGMGIALVLYRQLAPR 507 Ralstonia eutropha H16
YP_001397830 419 YLVGFAVGFVVYLFVMKT 436 Campylobacter jejuni subsp. doylei 269.97
EEA93219     429 YFVGFFTAFALYWVLMKA 446 Pseudovibrio sp. JE062
ABL14246     443 FVVGLVVAGVVYYILTKY 460 Bacillus fordii
EEY71841     432 YLVGFPIAFITYLLLMKV 449 Grimontia hollisae CIP 101886
EEX70126     435 WCLGFFIGGIAYYFLMKY 452 Mitsuokella multacida DSM 20544

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