Conserved Protein Domain Family
PLDc_N_DEXD_c

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cd10311: PLDc_N_DEXD_c 
N-terminal putative catalytic domain of uncharacterized prokaryotic and archeal HKD family nucleases fused to a DEAD/DEAH box helicase domain
N-terminal putative catalytic domain of uncharacterized prokaryotic and archeal HKD family nucleases fused to a DEAD/DEAH box helicase domain. All members of this subfamily are uncharacterized. Other characterized members of the superfamily that have a related domain architecture ( containing a DEAD/DEAH box helicase domain), include the DNA/RNA helicase superfamily II (SF2) and Res-subunit of type III restriction endonucleases. In addition to the helicase-like region, members of this subfamily also contain one copy of the conserved HKD motif (H-x-K-x(4)-D, where x represents any amino acid residue) in the N-terminal putative catalytic domain. The HKD motif characterizes the phospholipase D (PLD, EC 3.1.4.4) superfamily.
Statistics
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PSSM-Id: 197304
Aligned: 37 rows
Threshold Bit Score: 153.962
Created: 23-May-2011
Updated: 2-Oct-2020
Structure
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Aligned Rows:
 
putative activecatalytic site
Feature 1:putative active site [active site]
Evidence:
  • Comment:The HKD signature motif (expanded to H-x-K-x(4)-D-x(6)-G-S-x-N, where x represents any amino acid residue) characterizes the PLD superfamily.
  • Comment:Most residues in the HKD motif are part of the active site.

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1                                                                                         
YP_181824       5 DNVTDIVRDDLKqtv-krgSKVSIAAACFSmYAYKELKAQleqvdEFRFIFTsptfikekaekqkrefyiprlsressLY 83   Dehalococcoid...
YP_388240       5 NKKHGKVGETLLqsi-dkqSELAVISNAFSiFGFDALKKSiskvsKARLLLScnrkdg---------------slsqlLA 68   Desulfovibrio...
ZP_01065072     4 DNVTTKVSETISnsi-qanDKLSVMTGLFSiYAFDHLKDSlsqldSARLLFSqakgfdsl----------gsespfgaLN 72   Vibrio sp. ME...
YP_003109993    6 NTGTDRVIDLIRlgi-grsHRLDVLTPALSlFAFAEVNREareleGCRLVLPpngs-------------------dlaML 65   Acidimicrobiu...
YP_002018022    6 NSGTDRVIDYLRskl-tagCQFDMVTPSFSlFAFSGMLQEmvallTCRLLLPstit-------------------elsIL 65   Pelodictyon p...
NP_661799       6 NTGSDRVADLIHpav-ldgRQLDAVTPGLSiFAWAQLLRGlrraeRCRMVLPadls-------------------mmpLL 65   Chlorobium te...
YP_001632792    6 NTGTQRVIDLMRphl-khgNRLDCVTPSFSlYAFAEIREAlsaldQVQLIVPpdne-------------------aleLL 65   Bordetella pe...
YP_864710       6 NSGNDRVIDELRksl-pagSQLSIASSHFSlFAFAELRERlargkQCRLVMPalds------------------aniqLL 66   Magnetococcus...
YP_899933       6 NTGNDRVVDELRtcl-vprSSLDIASSAFSlFAYAEVSALfekieRCRLVIPateg------------------vdlgML 66   Pelobacter pr...
YP_575930       6 NAGNDRVIDQLRawlasgvATVDLMSPDFSlHAFAEAREMlekvsAARLLLGkdam------------------ggqsFF 67   Nitrobacter h...
Feature 1                                                  # #                # #            #    
YP_181824      84 GTEFEIKLRNEMTQKAIAKECADWIRRKATFKSNvtg-enMGGFMTVAapa--eevAYMPMNGFTTvDIGCERGNNSYNM 160  Dehalococcoid...
YP_388240      69 GDEFETRFRNQLNQSYIARECAEWIKKKAQIRLVknpaalGQNLFVVDgkp--splAIQGSSAFTCeGLGFAESDRHHMN 146  Desulfovibrio...
ZP_01065072    73 GTALENKFRNQLNQKAIAQEFAHWLEEKASVRLVqqagavHQHITHVNshs---esIAINGAQFNGqGIGLTESNGFDMI 149  Vibrio sp. ME...
YP_003109993   66 GTAADRPARNRLQSRWLAKRLLQWIENKAEVRRAls--piPQGAFVIRnsngrpvqALLGSLAFSTdGLGLTPGNPMNLI 143  Acidimicrobiu...
YP_002018022   66 GSEADRAARNRLQNRWIASRLLQWLQSKSEVKLApg--avPQGALVVRdgdavpeqVLLGSLAFTTdGLGLTPGNPLNLI 143  Pelodictyon p...
NP_661799      66 GSATDRSXRNQLQSRWLAGGMRDWIVEKADIRLArf--gvPQGALVIRnaeaqpvqALLGSFALTTdGLGLTPGNPLSLI 143  Chlorobium te...
YP_001632792   66 GTEGDRAARNRLQARWLANQCAKWISEKVALRRAsr--svPQGAAVMRgpdgapaqVVLGSFAFNTsGLGLTPGNPLNLI 143  Bordetella pe...
YP_864710      67 GTDSDRLARNRLQNRWLAAQCMAWLKAKAEVRLAas--plPQAALVTEgvtpvanhVITGNCSFTTeGLGLAPNAPFSLI 144  Magnetococcus...
YP_899933      67 GSESDRPFRNHLQTRWLARHCSEWIQKKAEVRGApt--ylPQSTIIAGepesatqkIITGNCPFTTdGLGLTPGNQFSLI 144  Pelobacter pr...
YP_575930      68 GGPSDISYRNKLQGRWLARNAHDWIKGSAEVRHTva--spPQSLIAMKget--qrhAVLGTCSFTTeGLGITPGSQLGLM 143  Nitrobacter h...
Feature 1          
YP_181824     161 V 161  Dehalococcoides ethenogenes 195
YP_388240     147 M 147  Desulfovibrio desulfuricans subsp. desulfuricans str. G20
ZP_01065072   150 S 150  Vibrio sp. MED222
YP_003109993  144 Q 144  Acidimicrobium ferrooxidans DSM 10331
YP_002018022  144 Q 144  Pelodictyon phaeoclathratiforme BU-1
NP_661799     144 Q 144  Chlorobium tepidum TLS
YP_001632792  144 Q 144  Bordetella petrii DSM 12804
YP_864710     145 Q 145  Magnetococcus sp. MC-1
YP_899933     145 Q 145  Pelobacter propionicus DSM 2379
YP_575930     144 Q 144  Nitrobacter hamburgensis X14

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