1H4I,1G72,1LRW,2D0V


Conserved Protein Domain Family
PQQ_MDH

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cd10278: PQQ_MDH 
Click on image for an interactive view with Cn3D
Large subunit of methanol dehydrogenase (moxF)
Methanol dehydrogenase is a key enzyme in the utilization of C1 compounds as a source of energy and carbon by bacteria. It catalyzes the oxidation of methanol to formaldehyde, transfering two electrons per methanol to cytochrome c(L) as the acceptor. Methanol dehydrogenase belongs to a family of dehydrogenases with pyrroloquinoline quinone (PQQ) as cofactor, which also includes dehydrogenases specific to other alcohols and membrane-bound glucose dehydrogenases. This alignment model for the large subunit contains an 8-bladed beta-propeller; the functional enzyme forms a heterotetramer composed of two large and two small subunits.
Statistics
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PSSM-Id: 199836
Aligned: 18 rows
Threshold Bit Score: 877.042
Created: 18-Apr-2011
Updated: 2-Oct-2020
Structure
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Program:
Drawing:
Aligned Rows:
 
Conserved site includes 18 residues -Click on image for an interactive view with Cn3D
Feature 1:active site [active site]
Evidence:
  • Comment:binding site for calcium and cofactor PQQ (pyrrolo-quinoline quinone)
  • Structure:1H4I: Methanol dehydrogenase from Methylobacterium extorquens binds PQQ and calcium, contacts at 4 A
  • Citation:PMID 7735834

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1                                              #                                      
1H4I_A     14 WVMPGKNYDSNNFSDLKQINKGNVKQLRPAWTFSTGLLNGHEGAPLVVD----GKMYIHTSFPNNTFALGLd--dPGTIL 87  Methylobacterium e...
1G72_A     16 WPIATGGYYSQHNSPLAQINKSNVKNVKAAWSFSTGVLNGHEGAPLVIG----DMMYVHSAFPNNTYALNLn--dPGKIV 89  Methylophilus meth...
AAU92935   42 WVMQTKDYSATHFSRLTEINSHNVKNLKVAWTLSTGTLHGHEGAPLVVD----GIMYIHTPFPNNVYAVDLn--dTRKML 115 Methylococcus caps...
ABJ87825   35 WTMPAKNYASTRFSTLTEVNTGTVKNLKLAWTFSTGLTRGHEAAPLVIN----NTMYIVTPWPNILYALDLtk-aGAPVK 109 Solibacter usitatu...
ADO44792   40 WPAPGRDYHLTRYSPLSQINTHNVKNLDLAWSFSTGVLRGHEGQPLVIG----NTMYVQTAYPNIVYALDIskgnDYKIL 115 Hydrogenobacter th...
ACS17354   55 WTMAARDHAGTRFSPLAEITSANAAKLQPAFTFSTGVVRGHEAAPLVVG----GTMYIVGPYPNTLFALDLak-pGAPLK 129 Variovorax paradox...
ACT48674   43 WVHPRKDFSNSGYSRLSQINKGNVKNMKLAWSFATGVNRGHEGAPLVVN----GVMYVHTAFPNNVYALDLn--dNQKIL 116 Methylotenera mobi...
ABR64943   47 WPIPAKNTAGTRYSELSEINTQNVKQLQVSFTFSTGVNKGHEGPPLVVG----GLMFIVSPYPNIVYALDLtr-pGAPLK 121 Sinorhizobium medi...
ABE49719   63 WTMPAKNYASTRYSGLSQINRDNVKDLKLAWTFSTGLTPGHEAAPVFVD----DTLYVVTPYPNTVYALAL----DGSKK 134 Methylobacillus fl...
ACK52058   43 WPGMGQNLGLQRHSELKDINKDNVSNLQMSWSQSSGALRGHEGQPVVVDvggkPMMFFVSAWPNIVQALDLsdpdNPVQV 122 Methylocella silve...
Feature 1                      ##  # #                                                 #      
1H4I_A     88 WQDKPKQNPAa--rAVACCDLVNRGLAYWPgdgktpALILKTQLDGNVAALNAETGETVWKVENSDIKvGSTLTIAPYVV 165 Methylobacterium e...
1G72_A     90 WQHKPKQDASt--kAVMCCDVVDRGLAYGA------GQIVKKQANGHLLALDAKTGKINWEVEVCDPKvGSTLTQAPFVA 161 Methylophilus meth...
AAU92935  116 WQYKPKQNPAa--rAVACCDVVNRGLAYVPagehgpAKIFLNQLDGHIVALNAKTGEEIWKMENSDIAmGSTLTGAPFVV 193 Methylococcus caps...
ABJ87825  110 WSYKPKPSPSs--qGVACCDVVNRGAAYYN------GRIYYNTLDMHTVAIDAATGKEIWNTVLGDINkGESMTMAPLVV 181 Solibacter usitatu...
ADO44792  116 WKYVPQQDDRa--vAVACCDTVMRGISYAD------GKIVMNTLDGHVIALDAKTGKELWKVKHADPYkGETITMAPIVA 187 Hydrogenobacter th...
ACS17354  130 WKFEPRPEAGs--qGVACCDQVNRGAAYAD------GRIFFNTLDNQTLAVDAASGAELWRAKLGDIRsGETMTMAPLVV 201 Variovorax paradox...
ACT48674  117 WSYFPKQDPSt--qALLCCDNVNRGLGYGE------GKIFLQQNDGLLVALDAKTGKKLWDTQVTNPKeGASNTNAPHVI 188 Methylotenera mobi...
ABR64943  122 WQYNPEPDASa--qGVACCDVVNRGPTYSD------GRLFFTTLDAHVVALDAGTGREIWNVKLGEINrGETMTMAPLVV 193 Sinorhizobium medi...
ABE49719  135 WEYKPDTHQEs--qGMACCDVVNRGLVHVN------GKLFFNTLDNHAIALEADTGKELWKTKVGDLQrGETMTMAPLVV 206 Methylobacillus fl...
ACK52058  123 WSYNKGTDRDvsavPRACCDVVNRGVNYAD------GKLLFNTLDGFLIALDAKTGQELWVVKHAFPEhGETVTSAPLIA 196 Methylocella silve...
Feature 1             ## #                                                                    
1H4I_A    166 KDKVIIGSSGAELGVRGYLTAYDVKTGEQVWRAYATGPDKDLLLASDfniknph-------------------------- 219 Methylobacterium e...
1G72_A    162 KDTVLMGCSGAELGVRGAVNAFDLKTGELKWRAFATGSDDSVRLAKDfnsanph-------------------------- 215 Methylophilus meth...
AAU92935  194 KDKVLVGSAGAELGVRGYVTAYNIKDGKQEWRAYATGPDEDLLLDKDfnkdnph-------------------------- 247 Methylococcus caps...
ABJ87825  182 KGIVIVGNSGGEFGVRGWLAGLDAKDGKIAWRAYAAGPDKDVLIGPSfrpfyaa-------------------------- 235 Solibacter usitatu...
ADO44792  188 KDKVIVGISGGEFGVRGRVAAYDLNSGRRVWLCYNQGPDQDMCYGSRtpas----------------------------- 238 Hydrogenobacter th...
ACS17354  202 RNKVLVGNSGGEFGVRGWLAALDAATGKTVWRAWSTGPDSDVLIGPQfkpfyaq-------------------------- 255 Variovorax paradox...
ACT48674  189 KDKVITGCSGGEYGVRCYISAYNIKDGALVWRAYSTGSDQDVLIGNDfnkdnphysalslyqdvnggnkiggsfkalpkd 268 Methylotenera mobi...
ABR64943  194 KDKVIAGISGGEYGVRGWIQALDAADGKTVWKAYSTGPDRDVKIGSDfkpfyee-------------------------- 247 Sinorhizobium medi...
ABE49719  207 KGKMLVGNSGGEMGVRGWLKALDTETGELLWTAYSTGPDKDVLIGEEfrpfyaq-------------------------- 260 Methylobacillus fl...
ACK52058  197 KDKVIVGFGGDEFAARGRLEAYDLATGDLAWRCQSNGTDKDVCLTPDtnkahpeh------------------------- 251 Methylocella silve...
Feature 1                                  # #                 #   #                          
1H4I_A    220 --------ygqkglGTGTWEGDAWKIGGGTNWGWYAYDPGTNLIYFGTGNPAPWNETMRPG------------DNKWTMT 279 Methylobacterium e...
1G72_A    216 --------ygqfglGTKTWEGDAWKIGGGTNWGWYAYDPKLNLFYYGSGNPAPWNETMRPG------------DNKWTMT 275 Methylophilus meth...
AAU92935  248 --------ygqfglGLSTWEGDAWKIGGGTNWGWYAYDPKLDMIYYGSGNPAPWNETMRPG------------DNKWTMT 307 Methylococcus caps...
ABJ87825  236 --------drapdlGVKTWSGDAWKIGGGSSWSWISFDPDLDLIYYGTANPGPWNADQRPG------------DNKWTCT 295 Solibacter usitatu...
ADO44792  239 ----------ykglGVNTWQGDQWKIGGATVWGWFSYDPKLNLVYYGTSNPGTWNPYIRCSasweec-qsgryDNKWSTS 307 Hydrogenobacter th...
ACS17354  256 --------drgkdlGVSSWPPEAWKIGGGNAWGWISYDPELDLVYYGTGNPGPWNPEQRPG------------DNRWTAG 315 Variovorax paradox...
ACT48674  269 qlkfpekdlgvktwLKPQAKKDGWQNGGGPTWGWYSYDPKLNLMYYGTGNPSTWNPDVRPG------------DNKWSMT 336 Methylotenera mobi...
ABR64943  248 --------drgkdlGVSTWPPNAWEIGGGTVWGFASYDPDLDLIFYGTANPGPWNPNQRPG------------DNKWTNT 307 Sinorhizobium medi...
ABE49719  261 --------dqgkdlGASSWPPEMWKIGGGTVWGWLSYDPELDLVYYGTGNPGPWNPDFRPG------------DNKWTLT 320 Methylobacillus fl...
ACK52058  252 -------gtyghdiGLSSYPGDEWKRGGGSPWAWYSYDPELGLVYASTGNPGNWSPTTRCGadtdaecnsgkwDNKWSMT 324 Methylocella silve...
Feature 1                            #                           #                            
1H4I_A    280 IFGRDADTGEAKFGYQKTPHDEWDYAGVNVMMLSEqkdkdGKARKLLTHPDRNGIVYTLDRTDGALVSANKLDDTVNvfK 359 Methylobacterium e...
1G72_A    276 IWGRDLDTGMAKWGYQKTPHDEWDFAGVNQMVLTDqp-vnGKMTPLLSHIDRNGILYTLNRENGNLIVAEKVDPAVNvfK 354 Methylophilus meth...
AAU92935  308 IWGRDADTGRAKFGYQKTPHDEWDYAGVNYMGLSEqe-vdGKLTPLLTHPDRNGLVYTLNRETGALVNAFKIDDTVNwvK 386 Methylococcus caps...
ABJ87825  296 IFARRPETGEAVWAYQMNPHDDHDYDGVNENILADlt-inGKLRKVLIHPDRNARMYVIDRATGEVISAETYAYQNTs-E 373 Solibacter usitatu...
ADO44792  308 IIARDADTGELVWAFQMTPFDQWDYDGVNESILLDvn-vgSKKVPALIHFDRNGFAFLLNRATGELIYAKPFVYVNWa-K 385 Hydrogenobacter th...
ACS17354  316 IFARRPDTGEAVWFYQFSPHDLHDYDGVNENILVDae-vgGKPRKVLVHPDRNGHVYLLDRASGEVLSARPFVKVTTs-L 393 Variovorax paradox...
ACT48674  337 IFARDVDTGEAKWGYQMTPHDEWDYDGMNEIILWE-----AKGKKLASHFDRNGFGYTFDRTNGSLLVANKMHPFVNwaF 411 Methylotenera mobi...
ABR64943  308 VFARDPDTGEARWAYQWNPHDLHDWDGINENILVDve-wrGKPRKALVHPDRNGLVYLLDRTTGEVLSASFYHPVNTh-G 385 Sinorhizobium medi...
ABE49719  321 VFARRPDDGSAIWAYQIEPHDLYDYDGVNESLLIDmp-fnGEQRKVLVRPERNGHVYVMDRTSGEVLSANTYVPVNVt-D 398 Methylobacillus fl...
ACK52058  325 IFARKVDTGEVVWAYQMTPFDQWDYDGVNENILVDmpnvdGKPVKALVHFDRNGFAYVLDRTDGNLLRAHKFVTVNWa-E 403 Methylocella silve...
Feature 1                                                 #                                   
1H4I_A    360 SVDL----------KTGQPVRDPEYgtrmdhlAKDICPSAMGYHNQGHDSYDP-KRELFFMGINHICMDWEPFMLPYRag 428 Methylobacterium e...
1G72_A    355 KVDL----------KTGTPVRDPEFatrmdhkGTNICPSAMGFHNQGVDSYDP-ESRTLYAGLNHICMDWEPFMLPYRag 423 Methylophilus meth...
AAU92935  387 KVDL----------KTGLPIRDPEYstrmdhnAKGICPSAMGYHNQGIESYDP-DKKLFFMGVNHICMDWEPFMLPYRag 455 Methylococcus caps...
ABJ87825  374 GVDL----------KTGRIKINPAKstg-lktVRDICPAPPGGKDWQPSAFSP-QTGWLYVPHNNLCYEAQSVEANYIag 441 Solibacter usitatu...
ADO44792  386 SWDErhardghtfkVTKDPTKSPWKpg---dnKKDVCPSAMGGKDQQPAAYSP-ETGLVYVPTNQWCMDYEPAETKYTeg 461 Hydrogenobacter th...
ACS17354  394 GVDL----------QTGRLRQDPARepkvgktIRGICPASPGGKDWQPSAYSP-RTRLVYIPHQNLCQDSQSSQVSYIag 462 Variovorax paradox...
ACT48674  412 NVDL----------KTGIPNKDPKFsthqdynAQGICPSALGVKDQQPAAFSP-KTGMFYVPLNHVCMTYEPVESKYVag 480 Methylotenera mobi...
ABR64943  386 GVDL----------KTGRIRINEEKyphdgkvIRNVCPTAPGAKDWSPSSFSH-QTGLLYIPHNNLCMDWESTEANYIag 454 Sinorhizobium medi...
ABE49719  399 GVDL----------KTGQMRKVKDKqpgtnrtVHNICPAAPGGKDWQPSAYSP-RTGLIYMPHNNLCMDMHGTQANYIag 467 Methylobacillus fl...
ACK52058  404 KVDL----------KTGRPVKVPEHspfkigvNTQACPSAMGGKDQQPASVDPkDPTNFYVPTNNWCMEDEPQARTHTqq 473 Methylocella silve...
Feature 1                                                          #                          
1H4I_A    429 -qfFVGATLNMYPGPkgdrq-----nyegLGQIKAYNAITGDYKWEKMERFAVWGGTMATAGDLVFYGTLDGYLKARDSD 502 Methylobacterium e...
1G72_A    424 -qfFVGATLAMYPGPngpt-------kkeMGQIRAFDLTTGKAKWTKWEKFAAWGGTLYTKGGLVWYATLDGYLKALDNK 495 Methylophilus meth...
AAU92935  456 -qfFVGATLNMYPGPkg-----------mLGQVKAMNAVTGKMEWEVPEKFAVWGGTLATAGDLVFYGTLDGFIKARDTR 523 Methylococcus caps...
ABJ87825  442 -tpYVGQNVRMYAGPgg-----------hRGEFSAWDPVSAKTVWTVKEMFPAWSGALVTAGNVVFYGTMDGWFRALDAK 509 Solibacter usitatu...
ADO44792  462 -apYVGANVLMKFYEhkssvhglsktpghYGRIIAWDPAKGEIKCYIDEKYPTWSGVLVTKGGVGFYGTMDGWFRAFDLK 540 Hydrogenobacter th...
ACS17354  463 -tpYVGTDARMYAGPgg-----------qRGRFTAWDPAAGKAAWTKEENFPVWSGALATAGDVVFYGTMDGWFKALDAH 530 Variovorax paradox...
ACT48674  481 -qpWVGSTLTMFPGPdg-----------vMGGFMAWDGLKGKSAWYKKEQFSAWGGALVTSTNLVFYGTLDRWFKAVDAN 548 Methylotenera mobi...
ABR64943  455 -tpYVGAEVRMYAGPgg-----------hRGELSAWDILAGKEVWTIKERFPVWGGTMTTAGGLVFYGNMEGWFKAVDAK 522 Sinorhizobium medi...
ABE49719  468 -tpYVGSDVKMFAGPgg-----------hRGAYTAWDPVAGSKVWSIKEEFPVWSGTVATAGDIVFYGTMDRWFKALDAK 535 Methylobacillus fl...
ACK52058  474 gtvYVFANVYMYPEKpg-----------vTGKLKKFDVLTGKTAWEVPDAYPNWSGTLNTAGGLVFYGSLNGDFRAVDRD 542 Methylocella silve...
Feature 1                                           #                                         
1H4I_A    503 TGDLLWKFKIPSGAIGYPMTYTh-kGTQYVAIYYGVGGWPGvglvfd----ladptaGLGAVGAFKKLan--yTQMGGGV 575 Methylobacterium e...
1G72_A    496 DGKELWNFKMPSGGIGSPMTYSf-kGKQYIGSMYGVGGWPGvglvfd----ltdpsaGLGAVGAFRELqn--hTQMGGGL 568 Methylophilus meth...
AAU92935  524 TGELKWQFQLPSGVIGHPITYQh-nGKQYIAIYSGVGGWPGvglvfd----lkdptaGLGAVGAFRELah--yTQMGGSV 596 Methylococcus caps...
ABJ87825  510 TGTKLWEFKVGSGIISQPITYKgpdGKQYIAVLSGVGGWAGaivagtl--npvdgtgALGFLSAMADLpn--yTNTGGML 585 Solibacter usitatu...
ADO44792  541 TCKVLWSKKLGSGIIGNPISFEv-nGKQYIAVYSGIGGWAGlpvtanl--dpndpygGLGATNLSLELdlyrqATMSGVL 617 Hydrogenobacter th...
ACS17354  531 TGALLWQYRTDSGIIGQPVSYRgpdGRQYVAVLSGVGGWAGavvsgdl--dardgtaALGFANAMRDLpa--aTRKGGKL 606 Variovorax paradox...
ACT48674  549 NGKELWKFQVGSGVVGNAITYSn-kGKQYVGVLSGIGGWAGvamnlg----ltnstdGLGAAGGYKDLvkynaAPGGGAM 623 Methylotenera mobi...
ABR64943  523 TGAVLWQFKTSSGIIGQPTTYRgpdGKQYVAVLSGVGGWAGsivsgdl--dprdstaALGFVNAMADLke--aTTKGGSL 598 Sinorhizobium medi...
ABE49719  536 TGELLWKYRVGSGIVGQPVTFQdkdGKQYVAIFSGVGGWSGaivsggl--dardgtaALGFVNAMKDLpq--hTDKGGQL 611 Methylobacillus fl...
ACK52058  543 NGKVLWQRKLGSGIIGNPIAYKi-kGHEYISVFAGIGGWIGlpavagldledkfgaiGSTALTKVIGLn---kIPQGGAL 618 Methylocella silve...
Feature 1          
1H4I_A    576 VVFSL 580 Methylobacterium extorquens
1G72_A    569 MVFSL 573 Methylophilus methylotrophus
AAU92935  597 FVFSL 601 Methylococcus capsulatus str. Bath
ABJ87825  586 YVFAL 590 Solibacter usitatus Ellin6076
ADO44792  618 YVFSL 622 Hydrogenobacter thermophilus TK-6
ACS17354  607 YAFKL 611 Variovorax paradoxus S110
ACT48674  624 NVFSL 628 Methylotenera mobilis JLW8
ABR64943  599 YVFAL 603 Sinorhizobium medicae WSM419
ABE49719  612 YVFSL 616 Methylobacillus flagellatus KT
ACK52058  619 YTFRV 623 Methylocella silvestris BL2

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