3PRW


Conserved Protein Domain Family
BamB_YfgL
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cd10276: BamB_YfgL 
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Beta-barrel assembly machinery (Bam) complex component B and related proteins
BamB (YflG) is a non-essential component of the beta-barrel assembly machinery (Bam), a multi-subunit complex that inserts proteins with beta-barrel topology into the outer membrane. BamB has been found to interact with BamA, which in turn binds and stabilizes pre-folded beta-barrel proteins; it has been suggested that BamB participates in the stabilization.
Links
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Statistics
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PSSM-Id: 199834
Aligned: 19 rows
Threshold Bit Score: 299.247
Created: 18-Apr-2011
Updated: 2-Oct-2020
Structure
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Program:
Drawing:
Aligned Rows:
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Trp docking
Conserved site includes 48 residues -Click on image for an interactive view with Cn3D
Feature 1:Trp docking motif [polypeptide binding site]
Evidence:
  • Comment:Trp docking interactions between the beta sheet propeller blades
  • Comment:consensus: A-x-[DN]-x-x-T-G-[DEK]-x-x-W.
  • Citation:PMID 9670773
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Sequence Alignment
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Format: Row Display: Color Bits: Type Selection: 
Feature 1                  ###  #                                       # #      ###  #        
3PRW_A      16 KMSPLPTVENQFTPTTAWSTSVGsgi-gnFYSNLHPALAd---NVVYAADRA-GLVKALNAD----DGKEIWSVSLAekd 86   Escherichia coli...
ADJ29117    37 PPMALVEFAPEVGVEVLWSAKVGkgt-rdHYLRLPLSIIg---DKVVAADYG-GQVSAFDAL----TGEKIWEIKLD--- 104  Candidatus Nitro...
ABZ87292    28 PTPLAEKPPKEAKVKVKWSRSTGngngglPIYNVSPAYAn---DMVFVPNQN-GMAYGLAIT----NGKIIWKHDTG--- 96   Francisella phil...
ABB41220    32 EPTPLIEMSSPYQAQKDWQIQLDa----fKYSDGEGLYFaddaDFVYFGTPAgVLTKALKATqdrwTDQIVWQKKIHe-- 105  Thiomicrospira c...
EFY07166    35 APVEAPEIENRFDIDKLWSSSVGgv--gdFYSQLSPAFSg---GIIYAAGRD-GDVYAYDAM----SGDRIWHTDLDdee 104  Succinatimonas h...
EGD20921    42 EPAELVKFEPSVKVDKLWSTGVGkge-ghIGVRQRPAVAd---GKVYASAIT-GGVEALDLQ----TGKRVWEYKPKkee 112  Xanthomonas gard...
EEF78451    36 PPTELTEFTNEFQPQVIWDASAGdg---aGETKNDLSVFwl-nGKIFAVDYE-GEVSAFNAE----TGRRVWETELDv-- 104  Methylophaga thi...
Q92IV6      43 IYLDSNANIYAFNANMLKNKQYSfa---rSKTITEPVFIg---DMIYALDIR-SNISAFSIE----KNKIIWSYNLSrh- 110  Rickettsia conor...
ACV62799    40 NDGLTTDSAPLSSASVAWQQQVGnt--smAGINHTPLVAg---GSVFAMDAF-GKLWSFDMK----TGTEKWSTQLScs- 108  Desulfotomaculum...
EEG30095    50 GVSDAKTPTSGDDLKKNWEVDLStsasdwAATPGTPIVV----GDYVYCYIK-NQIHKIDSN----TGEIVKSAEAPg-- 118  Clostridium meth...

Feature 1                                         # #  ###  #                                  
3PRW_A      87 gwfskePALLSGGVTVSg-GHVYIGSEKa---QVYALNTSDGTVAWQTKVA-----GEALSRPVVSD--GLVLIHTSN-- 153  Escherichia coli...
ADJ29117   105 ------LPITGGPGGSD--DLVVLGTEEa---EVIALDAANGSLVWRTNVS-----SEILSAPSVAD--GIVVIRSGD-- 164  Candidatus Nitro...
ABZ87292    97 ------TILSSQPSTIAn-AVIFGSTKG----TLTAVDQKDGQILWRTDAP-----SSIFSQPTIYS--NHLYTHTHD-- 156  Francisella phil...
ABB41220   106 ------PIVSGPTLYQG--HVIVGTAKA----TLMSLVKKDAQIAWQTELS-----SEVLSRPVIAE--GQIFVRTVD-- 164  Thiomicrospira c...
EFY07166   105 enddrrSARLAGGVTVYa-GKAAVGSENg---YIYVLNAKDGSLLWKDFVG-----GEVIAKPAFSKsgSALFVLDSR-- 173  Succinatimonas h...
EGD20921   113 rndrkfKQRLSGGPGVGe-GLVVIGTLSg---DVIALNQADGTEKWRAKVP-----NEVIAAPAIAQ--GLVLVRSND-- 179  Xanthomonas gard...
EEF78451   105 ------PVIAGIGGGMD--LVIVGTQKG----QLIALNEADGEERWRARLT-----SEVLAPPTTDG--GMVVSRTAD-- 163  Methylophaga thi...
Q92IV6     111 -----kKDNYIGGGILHhnGKLYVTYGSr---LLVVLDAKSGYEIIRKELPd----IIRIKPIVLND--NTVLVQTIS-- 174  Rickettsia conor...
ACV62799   109 -----iKQFQLSTPAYDs-GKLYAATNDg---HVYALDAGSGSILWDIPLQlaskySQLNTPVKYVD--GKIYIGAWNpd 177  Desulfotomaculum...
EEG30095   119 ------KSMFFITIAYGd-GKIFVPRESsdknYVIAYDADTLEKLFETEAIp---gAQLQSPVIYHD--GYIYLGSRAg- 185  Clostridium meth...

Feature 1             # #        ###  #                                       # #  ###  #      
3PRW_A     154 ---GQLQALNE------ADGAVKWTVNLDMp-SLSLRGESAPTTAf--GAAVVGGD--NGRVSAVLMEQGQMIWQQRISQ 219  Escherichia coli...
ADJ29117   165 ---DQVYGLDA------NDGSRLWVYQHNVp-ILTLRGVAAPVVAd--RKAIIGLA--GGKLVALTLEDGQLLWERAIVI 230  Candidatus Nitro...
ABZ87292   157 ---GSVTSFDA------TNGAKVWNVTNNIp-EITLPSDSSPIILn--DTVMVGSA--FGTVLGFTLDNGDRTINLPIAI 222  Francisella phil...
ABB41220   165 ---GKLYSVNA------ATGKVNWTIEHQLp-NLSLRGVAPVTYEd--GVLYVGWE--TGQVEALDAATGTRKWQSQVVI 230  Thiomicrospira c...
EFY07166   174 ---GRLTSYSS------DEGTVNWASGDALt-DLRLRSQSAPLVI---GDEFVLLGqsNGKVNVILQSTGAIVNQIDVGE 240  Succinatimonas h...
EGD20921   180 ---GRVSAFDA------TTGERRWFHAEEGp-TLSVRGNAPIVTGp--GVVFVGND--SGTLSALALQDGRPLWEQAIGV 245  Xanthomonas gard...
EEF78451   164 ---GRVTAVSA------DSGEVQWSYQRAVp-LLSLRGAGAPVIAg--DNVIAGYD--NGKLVALSLSDGKVVWEKSVAV 229  Methylophaga thi...
Q92IV6     175 ---NQTIALNA------ETLKTVWEHESLAe-VLSASYFMTPIVQy--DNVIVTYN--SGQILALNITNGEVKWNFEFTN 240  Rickettsia conor...
ACV62799   178 sasNEFYYCLDa-----VTGAPGIGGQYQMq-NSACGGGYYWTGAcivGKYMIFGSe-RSTLTCLDKDTGALISSVSLKV 250  Desulfotomaculum...
EEG30095   186 --sPEYVCFSTedtdpsTPDEVVEAAWSQAapEGSLGFGWIGAAFk-gDTCFFADA--SGTVYSVNAKTGALIDSFKLPN 260  Clostridium meth...

Feature 1                                            # #    ###  #                             
3PRW_A     220 Atg-stEIDRLSDVDTTPVVV--NGVVFALAYN-GNLTALDL--RSGQIMWKRELGs-vNDFIVDGn--RIYLVDQN--- 287  Escherichia coli...
ADJ29117   231 Prg-rtELDRLADIDSKPVVY--GGYIYTVTYN-GRIAALWL--ADGDILWTREMSs-yAGIGTDG---KSLYVTDMe-- 298  Candidatus Nitro...
ABZ87292   223 Ahg-ssPADKMVDITSNPMLY--GNYLIFGAYQ-GAIVALDR--DTGKMLWAKKASi-iNNMAINN---GVIFTVQAn-- 290  Francisella phil...
ABB41220   231 Pkg-rtDLERMVDIQATLRVE--AGRLFVLGYQ-GKLAALNP--ENGNLYWSKDISg-fRDFLIDD---SALYVVDEd-- 298  Thiomicrospira c...
EFY07166   241 Pyg-anALERVADVSATPLVI--GSTLYSVSYG-GGLVQYSF--ENNQVLSRLNYQs-sKDLAIDDs--SIVIVGDN--- 308  Succinatimonas h...
EGD20921   246 Peg-rtELERMSDVDGAPVLD--GTTLYATSFK-NETLALEG--PSGRPLWTRDHGg--AGGVGVSs--SVVVVSDNa-- 313  Xanthomonas gard...
EEF78451   230 Prg-rtELDRLVDIDADPVVK--NDNVYVVTYQ-GNVSGLDL--ASGQVLWSREMS---SQIGLDAaygEAVYISDDe-- 298  Methylophaga thi...
Q92IV6     241 Lnd-rtAIPNFDESSILCTPVhdNMNLYIATGL-GKLIKLNV--ATGSVIWQVNAEd-iQSMSLIG---NSLFVTNNa-- 310  Rickettsia conor...
ACV62799   251 Ys----SGAKEIRSSVSYDST--TGMVFLTDQG-GNCWSFKFdsDSGNLIYLWNKTidkTSTSTPAvydGKLYVGSGtya 323  Desulfotomaculum...
EEG30095   261 NetvtsTLNYYEKNNRLYISSn-GGSAVVRSYEvNKDGSLNQ--DSMKMYNSGWSGggtQSSPVIYn--DRLYLGGGggt 335  Clostridium meth...

Feature 1              # #  ###  #                                                # #  ###  #  
3PRW_A     288 ----DRVMALTIDGGVTLWTQSDLl------HRLLTSPVLY-------NGNLVVGDS-----EGYLHWINVEDGRFVAQQ 345  Escherichia coli...
ADJ29117   299 ----GSIWALESRTGASLWRQSKLl------RRQPTAPTPY-------QNYVVVGDS-----AGYVHWMAKEDGHFVARI 356  Candidatus Nitro...
ABZ87292   291 ----SELKAYDIQTGDTVWTQNILe------WRKITAPIYY-------KGLIVVADY-----QGYLHFFNSLNGDYLGRY 348  Francisella phil...
ABB41220   299 ----DVLYAFDYVNGTQLWKQDNFk------YRQAIDLVFYq------KNQILLADG-----QGYLHWIDKLDGTPVARI 357  Thiomicrospira c...
EFY07166   309 ----GYVYCLNRSDNSERWVNTVLt------YRSVSAPAIY-------GDYVVVGDL-----EGYLYFMSLNDGTIVCQH 366  Succinatimonas h...
EGD20921   314 ----GSVWGLDKSSGAAMWSQAALa------RRSLTGVAIQ-------GDYAVVGDY-----KGYLHWLKLSDGALAARA 371  Xanthomonas gard...
EEF78451   299 ----GYVWAVQDGSGDALWRQTRLl------RRQLSAPAVV-------GDYVVVGDL-----EGYVHWLARNDGRFVARQ 356  Methylophaga thi...
Q92IV6     311 ----RQIAAFNPETGKVKFVADLNdg---qdPKKLKSAAFL-------VPFVGVNNNn----KRSLNVISVNGVLYSFDV 372  Rickettsia conor...
ACV62799   324 --srGGLYCLDEQTGSELWNFMPTgdgevsvPGVQASPAIAvq---ngTPYIYFASIc---eNSLVYCLDQNGNQVWQFA 395  Desulfotomaculum...
EEG30095   336 mgsaEPFHVVDANTMQEIYTVEGLv-----tKGSAAITTAYateengnQVYAYLVPYapqgdSSVMYILKDKENQTEPDV 410  Clostridium meth...

Feature 1                                           # # 
3PRW_A     346 KVDSs-----GFQTEPVAAD---GKLLIQAK-DGTVYSITR 377  Escherichia coli K-12
ADJ29117   357 EVDEk-----GIVNAPLVLD---DILYVNSQ-GGILKAIKI 388  Candidatus Nitrosococcus watsonii C-113
ABZ87292   349 KLTPksdffdYGISGQLVPTe--KGILVEAD-SGTTYLVDA 386  Francisella philomiragia subsp. philomiragia ATCC 25017
ABB41220   358 KHGSh----yGTSNSIVRVWatgNRVYVQDT-DGFNNAYSI 393  Thiomicrospira crunogena XCL-2
EFY07166   367 EVDDs-----AIYTAPLVAD---GNLYVSTR-DGDLTAYKY 398  Succinatimonas hippei YIT 12066
EGD20921   372 RAGRd-----TLLAQPIVVD---GILLVQNT-DGDITAFRL 403  Xanthomonas gardneri ATCC 19865
EEF78451   357 QISDa-----AIRSKPFVKD---GVVYITAL-DGSISAVRV 388  Methylophaga thiooxidans DMS010
Q92IV6     373 DNNGl----nMIPHVVKIIK---NIRYYGLSaNNNLYFSTD 406  Rickettsia conorii str. Malish 7
ACV62799   396 VPNYt-----YTTTSIAVAD---GWLYLGND-YGWLYALKG 427  Desulfotomaculum acetoxidans DSM 771
EEG30095   411 EIVQnvgekqYCSQSMAIDKn--GNLVFYND-AKKLYSFGR 448  Clostridium methylpentosum DSM 5476

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