2DDU


Conserved Protein Domain Family
Reelin_repeat_3_subrepeat_2

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cd10047: Reelin_repeat_3_subrepeat_2 
Click on image for an interactive view with Cn3D
C-terminal subrepeat of tandem repeat unit 3 of reelin and related proteins
Reelin is an extracellular glycoprotein involved in neuronal development, specifically in the brain cortex. It contains 8 tandemly repeated units, each of which is composed of two highly similar subrepeats and a central EGF domain. This model characterizes the C-terminal subrepeat, which directly contacts the N-terminal subrepeat and the EGF domain in a compact arrangement. Consecutive reelin repeat units are packed together to form an overall rod-like molecular structure. Reelin repeats 5 and 6 are reported to interact with neuronal receptors, the apolipoprotein E receptor 2 (ApoER2) and the very-low-density lipoprotein receptor (VLDLR), triggering a signaling cascade upon binding and subsequent tyrosine phosphorylation of the cytoplasmic disabled-1 (Dab1).
Statistics
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PSSM-Id: 197355
Aligned: 6 rows
Threshold Bit Score: 263.217
Created: 25-Mar-2011
Updated: 2-Oct-2020
Structure
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Program:
Drawing:
Aligned Rows:
 
reelin repeatreelinEGF domain
Conserved site includes 11 residues -Click on image for an interactive view with Cn3D
Feature 1:reelin repeat interface
Evidence:

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1           # #                                                       ## # #              
2DDU_A        229 HSEMFDRFEGKLsp---lWYKITGGQVGtGCGTLnDGRSLYFNGlGKREARTVPLDTRNIRLVQFYIQIGSktsgitcik 305  house mouse
O93574       1196 HSEMFDRFERKLsp---lWYKITGGQVGtGCGVLsDGKSLYFNGpGKREARTVPLDTTNIRLVQFYVQIGSkatgnscnr 1272 chicken
CAG08723     1492 PTELTEGFEGKLsp---lWQSLSGGQIGgGCGIIsEGKALYFSSpGRRELRTVPLDTSNTRLVQFYIRIGSkslgptctr 1568 spotted green...
XP_788608     319 PQSFIDGFDTMRpqsdgqWSHTLGADVGqGCGVIkMDNSLYFSStGPREAQTEPVNTTSIKIVQFYVQIGSmdqgdqcmp 398  purple urchin
XP_002120384 1424 LDGFSVNFNELStd---yFHYMRGGKLGnGCGNIkSGKSIYFGGeGTRLLQTNPINTTNIRLVQFYLKLGNslndeecla 1500 Ciona intesti...
NP_001131084 1451 PSEMFDRFEGKLsq---qWYKITGGQVGtGCGVLsDGKSLYLNGpGKREARTAALDTTNTRLIQFYIQIGNtnggstcgk 1527 western clawe...
Feature 1                                             # ###                                       
2DDU_A        306 PRARNEGLVVQYSNDNGILWHLLRELDFMSFL-EPQIISIDLPREAKTPATAFRWWQPQHgk------------hSAQWA 372  house mouse
O93574       1273 PRSRNEGLIVQYTNDNGITWHLLRELDFMSYL-EPQVVSIDLPREAKTSATAFRWWQPQHgk------------hSAQWA 1339 chicken
CAG08723     1569 PRSRNEGVIVQFSTNNGVQWQFLRELDFSSFL-EPQVVTIELPSAAKTPYTVFRWWQPQQgk------------hSAQWA 1635 spotted green...
XP_788608     399 AMDRSEAIIVQYSNNSGITWHTLKVLDPTQLGeRSTQVTISLPSGAKTPDTVFRWWQPFVslg----------ipRAQWA 468  purple urchin
XP_002120384 1501 PTIRDEGILFQYSNDNGITWKLIKELYFDAYQeSPTLIKLQIPLRAKTESTIFRWWQPLPtnevrfrwaeasvdpTCQWK 1580 Ciona intesti...
NP_001131084 1528 PKARNEGVVVQYTNDNGISWNLLRELDFMSYL-EPQIISIELPRNAKTSGTAFRWWQPQHgk------------qSAQWA 1594 western clawe...
Feature 1             #  
2DDU_A        373 LDDVLIS 379  house mouse
O93574       1340 LDDVLIG 1346 chicken
CAG08723     1636 LDDVLIG 1642 spotted green pufferfish
XP_788608     469 LDNIVIG 475  purple urchin
XP_002120384 1581 LDNVYLG 1587 Ciona intestinalis
NP_001131084 1595 LDDVLIG 1601 western clawed frog

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