3A7Q,2E26


Conserved Protein Domain Family
Reelin_repeat_5_subrepeat_1

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cd10041: Reelin_repeat_5_subrepeat_1 
Click on image for an interactive view with Cn3D
N-terminal subrepeat of tandem repeat unit 5 of reelin and related proteins
Reelin is an extracellular glycoprotein involved in neuronal development, specifically in the brain cortex. It contains 8 tandemly repeated units, each of which is composed of two highly similar subrepeats and a central EGF domain. This model characterizes the N-terminal subrepeat, which directly contacts the C-terminal subrepeat and the EGF domain in a compact arrangement. Consecutive reelin repeat units are packed together to form an overall rod-like molecular structure. Reelin repeats 5 and 6 are reported to interact with neuronal receptors, the apolipoprotein E receptor 2 (ApoER2) and the very-low-density lipoprotein receptor (VLDLR), triggering a signaling cascade upon binding and subsequent tyrosine phosphorylation of the cytoplasmic disabled-1 (Dab1).
Statistics
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PSSM-Id: 197349
Aligned: 8 rows
Threshold Bit Score: 263.188
Created: 19-Apr-2010
Updated: 2-Oct-2020
Structure
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Program:
Drawing:
Aligned Rows:
 
reelin repeatreelinEGF domain
Conserved site includes 14 residues -Click on image for an interactive view with Cn3D
Feature 1:reelin repeat interface
Evidence:
  • Structure:2E26: The N-terminal subrepeat of the mouse reelin repeat tightly packs against the C-terminal subrepeat of the previous reelin repeat, contacts at 4 A

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1                         ##                                                    ## #   ###
3A7Q_A         12 LLLDTFDFGPr-EDNWFFYPGGNIGl-YCPYssk--------------------gapEEDSAMVFVSneVGEHSITTRDL 69   house mouse
2E26_A         12 LLLDTFDFGPr-EDNWFFYPGGNIGl-YCPYssk--------------------gapEEDSAMVFVSneVGEHSITTRDL 69   house mouse
O93574       1705 ILLDTFDFGPk-EDNWFFYPGGNIGl-YCPYssk--------------------gapEEDSAMVFVSneVGEHSITTRDL 1762 chicken
NP_001131084 1960 ILLDTFDFGPn-EENWFFYPGGNIAl-YCPYtsk--------------------gspEEDSAMVFVSneVGEHSITTRDL 2017 western clawe...
CAG08723     2003 VVIDSFDEGPn-DSNWLFFPGGNTGl-YCPYqkt--------------------gleEDESAMVFLSseLGEHSITTRDI 2060 spotted green...
XP_784287     112 PLQETFELGRinNNDWLFYPGATTLteHCPQhqrqgvsylppspyelsrgnglsyqiGNHPSLVFPHs-IGEHSVTTRDI 190  purple urchin
AAN76666      415 LVLDGFESGPq-EQNWLFYPGGNTGf-YCPYqra---------------------gaEEDSAMVFMSseLGEHSITTRDI 471  zebrafish
XP_002120384 1791 LLTDDFNILN--NSNWAFNSGGKLGs-YCTNils---------------------pdISSSSLLFNQt-LGETSVTTRDL 1845 Ciona intesti...
Feature 1         #                                  ##                                           
3A7Q_A         70 SVNE-NTIIQFEINVGCstDSSSADPVRLEFSRDfGATWHLLLPLCYHssslvSSLCSTeHHPSSTYYAGTTQ------- 141  house mouse
2E26_A         70 SVNE-NTIIQFEINVGCstDSSSADPVRLEFSRDfGATWHLLLPLCYHssslvSSLCSTeHHPSSTYYAGTTQ------- 141  house mouse
O93574       1763 SVNE-NTIIQFEINIGCttDSSSADPVKLEFSRDlGATWHLLLPLCYSssshlSSLCSTeHHPSSTYYTGTTQ------- 1834 chicken
NP_001131084 2018 DVDE-NTIIQFEINVGCtsDSSSADPVKLEFSRDfGATWHLLLPLCYSssshiSSLCSTeHHPSSTYYAGTTQ------- 2089 western clawe...
CAG08723     2061 EVNE-NTIIQFEINVGCtvESSSNYPVRLEFSRDfGATWHLLVPLCAGap-qpSALCSTeLHPASIYFPGTTQ------- 2131 spotted green...
XP_784287     191 DIDE-SSILQFEINVGCtnQSSATHPVRLEVSRDyGSSWSLLSPDCFSnq-stCLSCSEhLTTPTVYYSGENE------- 261  purple urchin
AAN76666      472 DVNE-NTVVQFQINVGCtaESSSLNPVRLEFSRDfGASWQLLVPLCAGgp-rlSSLCSTqLHPASSVLPRHQPaleegeh 549  zebrafish
XP_002120384 1846 CFTSsDYLVMFKIAVGCdtEGSSEQFVRFEYSTDnGQTWDLVQPYCDGrd--iNAHCSFsDHPSSVYYTGYLN------- 1916 Ciona intesti...
Feature 1                                       ## #                             
3A7Q_A        142 -------GWRREVVHFGKL--------HLAGSVRFRWYQGFYPag---sqPVTWAIDNVYIGP 186  house mouse
2E26_A        142 -------GWRREVVHFGKL--------HLCGSVRFRWYQGFYPag---sqPVTWAIDNVYIGP 186  house mouse
O93574       1835 -------GWRREVIHFGKL--------HLCGLTRFRWYQGFYPag---sqPVTWAIDNVYIGP 1879 chicken
NP_001131084 2090 -------GWRREVINFGKL--------RLCGSIRFRWYQGFYPit---mqPVTWAIDNIYIGP 2134 western clawed frog
CAG08723     2132 -------GWRREVIHFGKLrlcglymcFFHRSVRFRWYQGFFSsg---ssPPTWALDNIYIGP 2184 spotted green pufferfish
XP_784287     262 -------RWVRYTILLSRL--------HVCGTVRFRWYQGFFTaq---enPKQWAIDGIYIGP 306  purple urchin
AAN76666      550 taghtaaLWLRQVPLVPGLf------fEWCSSAHLGSGQCVHRaa---vpGHVHRARCVCSGA 603  zebrafish
XP_002120384 1917 -------HYQNIIISLKHLpn-----iCSLDAVRFRWFQGFHSshqealeATPWSLDNVYIGP 1967 Ciona intestinalis

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