2DDU


Conserved Protein Domain Family
Reelin_repeat_3_subrepeat_1

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cd10039: Reelin_repeat_3_subrepeat_1 
Click on image for an interactive view with Cn3D
N-terminal subrepeat of tandem repeat unit 3 of reelin and related proteins
Reelin is an extracellular glycoprotein involved in neuronal development, specifically in the brain cortex. It contains 8 tandemly repeated units, each of which is composed of two highly similar subrepeats and a central EGF domain. This model characterizes the N-terminal subrepeat, which directly contacts the C-terminal subrepeat and the EGF domain in a compact arrangement. Consecutive reelin repeat units are packed together to form an overall rod-like molecular structure. Reelin repeats 5 and 6 are reported to interact with neuronal receptors, the apolipoprotein E receptor 2 (ApoER2) and the very-low-density lipoprotein receptor (VLDLR), triggering a signaling cascade upon binding and subsequent tyrosine phosphorylation of the cytoplasmic disabled-1 (Dab1).
Statistics
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PSSM-Id: 197347
Aligned: 6 rows
Threshold Bit Score: 285.175
Created: 20-Apr-2010
Updated: 2-Oct-2020
Structure
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Program:
Drawing:
Aligned Rows:
 
reelin repeatreelinEGF domain
Conserved site includes 14 residues -Click on image for an interactive view with Cn3D
Feature 1:reelin repeat interface
Evidence:

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1                              ##                         ## #   ####                     
2DDU_A         24 KPAFDYPMNQm------sVWLMLANEGMAKndsfcatTPSAMVFGKsDGDRFAVTRDLTLKpGYVLQFKLNIGCt----- 92   house mouse
CAG08723     1235 YEKPAFDYPLnq----msVWLMLGNEGMEResn-dipTPSAMVFGRsDGDRVAVTRDLALRhGYTLQFKVWLGGmvevfp 1309 spotted green...
XP_002120384 1195 FQQPHDNLQLhevqlkenIFTTFSNIGNWVdfc--spRNGSFVFNKlKGDRFAMTKDIFLKaGDVIQFQINIGCs----- 1267 Ciona intesti...
O93574        988 YEKPAFDYPMnq----lsVWLILANEGMTKnesfcsaTPSAMLFGKsDGDRFAVTRDLTLKpGYVLQFKLNIGCt----- 1058 chicken
NP_001131084 1243 YEKPAFDYPVnq----mnVWLMLANEGMPKnesfcslTPSAMIFGKsDGDRFAVTRDLTLKpGYVLQFKLNVGCt----- 1313 western clawe...
XP_788608     118 SLEASFVNDSph----pdIWMSTSSGQMGTfc---gsRGPALYFDAvGEDRFAVTRSMQLTtRDVVQFKVVVGCq----- 185  purple urchin
Feature 1                                            ##                                           
2DDU_A         93 ------------------sQFSSTAPVLLQYSHDaGMSWFLVKEGCFPasa----------------gkgCEGnSRELSE 138  house mouse
CAG08723     1310 ahttffffflfqlnigcesEFSAAAPVLLQYSHDaGRTWALVREGCYPgtpg---------------sgvCEGsGRELRE 1374 spotted green...
XP_002120384 1268 ------------------kNFSFENPVRLEYSHDgGHTWDYVRHSCYPngrslteedlsshspedstshlCTGaSRELRE 1329 Ciona intesti...
O93574       1059 ------------------nQYSSSAPVLLQYSHDaGLFWSLVKEGCYPaspg---------------tkgCEGsSRELSE 1105 chicken
NP_001131084 1314 ------------------nEFSGMAPVLLQYSHDaGLSWSLVREGCYPaspg---------------ikdCEGsSRELGE 1360 western clawe...
XP_788608     186 ------------------eEFSHFAPVYLEKSTDgGLHWELVSTPCYPfseg---------------evqCDGqGGELRD 232  purple urchin
Feature 1                                  ## #                        
2DDU_A        139 pTVYYTGDFEEWTRITIAIPRsLASSKTRFRWIQESSSqknVPPFGLDGVYIS 191  house mouse
CAG08723     1375 pTVYNTGDYEQWTRVTVVIPRnVAASKTRFRWFQESSVyreAPPFALDGVYIS 1427 spotted green pufferfish
XP_002120384 1330 sSQYHAGDYDEWKTVVIPVLPmIAEAPSRFRWTQRIENe--PLDWAIHNVYIG 1380 Ciona intestinalis
O93574       1106 pTVYHTGDFEDWTRITIVIPRsLAASKTRFRWIQESSShksVPPFGLDGVYIS 1158 chicken
NP_001131084 1361 pTSYYTGDYEDWTRITIVIPRsLASSKTRFRWIQESSSfsnVPAFGLDGVYIS 1413 western clawed frog
XP_788608     233 gSIYHSGRYNDWGLIVIPVQSdMTHSNVQFRWWQAGDPl--APAFGLDDVYIG 283  purple urchin

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