1MUG,1WYW,2RBA,2C2Q,2C2P


Conserved Protein Domain Family
UDG-F2_TDG_MUG

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cd10028: UDG-F2_TDG_MUG 
Click on image for an interactive view with Cn3D
Uracil DNA glycosylase family 2, includes thymine DNA glycosylase, mismatch-specific uracil DNA glycosylase and similar proteins
Uracil DNA glycosylase family 2 consists of thymine DNA glycosylase (TDG), which removes uracil and thymine from G:U and G:T mismatches in double-stranded DNA. It includes mismatch-specific uracil DNA glycosylase (MUG), the prokaryotic homolog of TDG. Escherichia coli MUG is highly specific to G:U mismatches but also repairs G:T mismatches at high enzyme concentration. Uracil-DNA glycosylases (UDGs) initiate repair of uracils in DNA. Uracil in DNA can arise as a result of misincorporation of dUMP residues by DNA polymerase or via deamination of cytosine. Uracil in DNA mispaired with guanine is one of the major pro-mutagenic events, causing G:C->A:T mutations. Thus, UDG is an essential enzyme for maintaining the integrity of genetic information. UDGs have been classified into various families on the basis of their substrate specificity, conserved motifs, and structural similarities. Although these families demonstrate different substrate specificities, often the function of one enzyme can be complemented by the other..
Statistics
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PSSM-Id: 381679
Aligned: 297 rows
Threshold Bit Score: 114.113
Created: 2-Dec-2010
Updated: 2-Oct-2020
Structure
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Program:
Drawing:
Aligned Rows:
 
Conserved site includes 17 residues -Click on image for an interactive view with Cn3D
Feature 1:active site [active site]
Evidence:
  • Comment:glycosidic bond cleavage follows a "pinch-push-pull" mechanism
  • Structure:2RBA; Human TDG binds damaged DNA, contacts at 4A

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1                     ## #            ###                                             
1MUG_A      2 VEDILAPG-LRVVFCGINPGlSSAGTGFPFAHPANRFWKVIYQAGFTDRQLKP--QEAQHLLD---YRCGVTKLVDRPTv 75   Escherichia coli
2RBA_A     20 LPDILTFN-LDIVIIGINPGlMAAYKGHHYPGPGNHFWKCLFMSGLSEVQLNH--MDDHTLPGk--YGIGFTNMVERTTp 94   human
EIW74436  158 LSDNVKEG-LDVIFCGINPGeMSAQRGHHFARPNNHFWRCLYQSGLTPRQLSP--NEDYTLPDk--FNLGLTNLVARPSa 232  Coniophora putean...
KIK64039  115 LNDCLLES-LDIMFCGINPGqRSAEIGHHFAHASNHFWKCLHLSGLTPERIPP--TEDYTLPEr--YRLGLTNIVDRPTa 189  Gymnopus luxurian...
KZS97375  119 LQDHLDYD-LDIVFCGINPGkMSATKGHHFANPTNHFWKCLHRSGLTTELIPP--EQDFTLPEr--FSLGLTNLVERPSs 193  Sistotremastrum n...
KEP52190  718 VQDNLDYD-LNILFCGINPGqKSAGQGHHFANPLNGFWRCLHRGGLTDVLLPP--SEDHTLPEr--FRLGITNLVDRPSa 792  Rhizoctonia solan...
KIY69095   93 LPDHLRYE-LDILFCGINPGvVSATVGHHYGHATNHFYKCLHSSGLTPGDAPLlpVEDVTLPEr--FNFGLTNLGDRPTp 169  Cylindrobasidium ...
SHO77236    5 LPDYIQPN-IDILFCGINPGtESGAQGRHYAHHSNHFYKCLYAAHITTEKLNH--MDDETFPSlrpYKLGLTNLAHRPTa 81   Malassezia sympod...
KZO92024    5 IKYGSVSKlVDVILRIYSPGvMSAETGHHFASPTNHFWRALHQGGLVQQFVPA--SEDYTLPEk--YNLGMTNLVDRPSa 80   Calocera viscosa ...
KZT50762  103 LHDYLAMG-LDVMFCGINPGvMSAETGHHFASPTNHFWRALHQGGLVPNFVPA--SEDYTLPEk--YNLGMTNLVDRPSa 177  Calocera cornea H...
Feature 1                                     ###                                           # 
1MUG_A     76 qanevskqELHAGGRKLIEKIEDYQPQALAILGKQAYEQGFsq-------------------------------rgAQWG 124  Escherichia coli
2RBA_A     95 gskdlsskEFREGGRILVQKLQKYQPRIAVFNGKCIYEIFSkevfg-------------------------vkvknLEFG 149  human
EIW74436  233 eaaelskaEMQESVPTFLEKVAHLRPRFICFIGLGIWEVVRgvllkmlasesagkasliptpaktkvkspkksgakAGPG 312  Coniophora putean...
KIK64039  190 eatelkdsEFKEGIVPFLSKVARYRPRIACFIGVRTGRIVLdhvmrgl---------------------pktqrqgFLLG 248  Gymnopus luxurian...
KZS97375  194 seselsvaEMADSIPAFLAKITKYRPKILCIVGVGIWRVIEkniknnsvngvrl---------evpemngvddskaSPKG 264  Sistotremastrum n...
KEP52190  793 emaelslaERRAAVPGFLRKVHKWRPRIVCMVGKGIWEDVFayvskaskgkcesdgi---rveectgqsgqrswteIKAG 869  Rhizoctonia solan...
KIY69095  170 tqgdlsndELKAGVTPLMRKVAFYRPRIVAFVGITMAKIAFqaatgk------------------------pakivDNPG 225  Cylindrobasidium ...
SHO77236   82 kseqltraELERGVPELLKKIQKYRPRIVCFVGKQIGDTFLkvvhkrcwindvqsipl-prhvagfwhskpdlipkADLG 160  Malassezia sympod...
KZO92024   81 eaaelsakEMLEGAPAFLDKVATWRPRIICFVGKGIWLAVQknldsriaaaaaq----------agrekttkpkdaFDYG 150  Calocera viscosa ...
KZT50762  178 eaaelsakEMVESAPAFLQKVTTWRPRIICFVGKGIWLAVQknldt-------------------------rtaavLPTG 232  Calocera cornea H...
Feature 1                                        ## #####                        
1MUG_A    125 KQtlt---------------------igSTQIWVLPNPSGLSRvsl----------ekLVEAYRELD 160  Escherichia coli
2RBA_A    150 LQphki-------------------pdtETLCYVMPSSSARCAqfpr--------aqdKVHYYIKLK 189  human
EIW74436  313 LQpfklvssigd------dntaeegtekDTLIFVVPSTSGRVTsyq---------lpdKVAFFSELR 364  Coniophora puteana RWD-64-598 SS2
KIK64039  249 LQpykivysnsecgsseaskspesscisETLFYAVPSTSGKVQgyq---------ipdKVKLFSQLK 306  Gymnopus luxurians FD-317 M1
KZS97375  265 KKkvkdddlalrpy--vlvyhsekeiesKTLIFVSPSTSGLVTshq---------lpdKVVIFSSLR 320  Sistotremastrum niveocremeum H...
KEP52190  870 FEfdiqpvcll--------hspdkeqdgRTLFFVVPSTSSRVLthq---------lpdKIILFQLLK 919  Rhizoctonia solani 123E
KIY69095  226 LMpfkmvhg------------agngnveETLFFVTPSTSGRVTqfq---------lpdKIAVFAELK 271  Cylindrobasidium torrendii FP1...
SHO77236  161 YGvlpicm--------------qhedtsSTLFFVTPSTSARVThhl---------lpdKTRLFAHIP 204  Malassezia sympodialis ATCC 42132
KZO92024  151 LQpytsslit-----------piptginRTLIWVMPSTSGRVVshq---------lvdKIKLFSRLK 197  Calocera viscosa TUFC12733
KZT50762  233 GQktvveapedvk----daveedmpdsaSRSTATAPSPSTPKGvqkkkpakrkdvfdyGLQPYVLLL 295  Calocera cornea HHB12733

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