1YTF,1NVP,1RM1


Conserved Protein Domain Family
TFIIA_gamma_C

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cd10014: TFIIA_gamma_C 
Click on image for an interactive view with Cn3D
Gamma subunit of transcription initiation factor IIA, C-terminal domain
Transcription factor II A (TFIIA) is one of the general transcription factors for RNA polymerase II. TFIIA increases the affinity of the TATA-binding protein (TBP) for DNA, in order to assemble the initiation complex. TFIIA also functions as an activator during development and differentiation, and is involved in transcription from TATA-less promoters. TFIIA is composed of more than one subunit in various organisms. Mammalian TFIIA large subunits (TFIIA alpha and beta), and the smaller subunit (TFIIA gamma) form a heterotrimer. TFIIA alpha and beta are encoded by a single TFIIA_alpha_beta gene and post-translationally processed and cleaved. TOA1 and TOA2 are the two subunits of Yeast TFIIA which correspond to Mammalian TFIIA_alpha_beta and TFIIA gamma, respectively. TOA1 and TOA2 form a heterodimeric protein complex. The TFIIA gamma subunit is highly conserved between humans, Drosophila and yeast and it is required for TFIIA function. The C-terminal domain of the gamma (TFIIA_gamma_C) subunit forms a beta-barrel structure together with TFIIA beta.
Statistics
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PSSM-Id: 199900
Aligned: 40 rows
Threshold Bit Score: 41.4643
Created: 18-Nov-2009
Updated: 2-Oct-2020
Structure
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Program:
Drawing:
Aligned Rows:
 
TFIIA subunitTBP interface
Conserved site includes 24 residues -Click on image for an interactive view with Cn3D
Feature 1:TFIIA subunit interface [polypeptide binding site]
Evidence:
  • Comment:TFIIA is composed of more than one subunit
  • Comment:Human TFIIA is a heterotrimer, the three subunits being known as alpha, beta, and gamma, in order of molecular weight
  • Structure:1NVP: human TFIIA gamma chain binds beta chain, contacts at 4A
  • Structure:1YTF: Saccharomyces cerevisiae Toa2 binds Toa1-C (beta subunit), contacts at 4.0 A
  • Citation:PMID 8610010

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1        ###### #  # #  # # #          #                    ### ########  
1YTF_D        59 LTVKGN-LDTYGFCDDVWTFIVK----NCQVTVEdshrdasqngsgdsqsVISVDKLRIVACNSK 118 baker's yeast
1NVP_D        55 VNFRGS-LNTYRFCDNVWTFVLN----DVEFREVt--------------eLIKVDKVKIVACDGK 100 human
CBK25518      61 AQLRGD-IQFYKRLYDTWSFSLLnwcmDVEGSESyteqt-------akffSTLAPKLSFVCLKKH 117 Blastocystis hominis
C4QGM3        57 LSLRGH-LNTYRNCDNVWTLVMN----DVEIKDSs--------------aIMTVDKAQRDYFGAH 102 Schistosoma mansoni
XP_002680741  70 VSFKAG-CTTFNFNNNVYVWMLN----DVNLKMGnt-------------kLDTLDFVKVVACEGT 116 Naegleria gruberi strain NEG-M
XP_001702744  56 ATMKAN-MKTYHYYENVWTFSLE----KVEFKLNqagngs-----mngaqSLACDTAKVVVVDAK 110 Chlamydomonas reinhardtii
Q9W5B9        56 MSFTAErLETFRCCDNVWTLILK----DAEFREDq--------------hSLKVDVVKIVACLGT 102 fruit fly
EDY68001      56 LTFTGSrLSSYQFCDNVWTLRLK----DVEFCSKnh-------------vIAKVDKVKIVACESD 103 Drosophila pseudoobscura pseud...
EFR19440     167 VTFKAGkLNTYRFCDNVWTLMLN----DVEFREVhefakygqitphlsgrVLIQFDKSINAALSN 227 Anopheles darlingi
Q01FA7        55 ASIKGQ-LHTYRFCGNVWTFIVE----DAVVNVTdtds---------tsrESRVKLLKVVACDGK 105 Ostreococcus tauri

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