Conserved Protein Domain Family
Cas3''_I

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cd10013: Cas3''_I 
CRISPR/Cas system-associated protein Cas3''
CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; HD-like nuclease, specifically digesting double-stranded oligonucleotides and preferably cleaving at G:C pairs; signature gene for Type I
Statistics
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PSSM-Id: 193609
Aligned: 19 rows
Threshold Bit Score: 88.2437
Created: 7-Oct-2002
Updated: 2-Oct-2020
Structure
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Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
NP_578368     12 REHIEAMLAAWEivk--nkYIPSIIRVMKTvgvkfteedaDKFMKTLIILHDVGKCSEvyqkhlsn-----neplrgfrH 84  Pyrococcus furi...
14601272      24 EEHVQRSLEVWLgrl-kkcYSSAVNRIIYSqgsqtlasvlGDPVAVAIVLHDIGKAVPayqkkrim------rgrvqyrH 96  Aeropyrum pernix
YP_003458591  18 EEHIEKGLEVIDfyi-krnYHKKLAKCLGVdnk-----vgKITLETSYVLHDSAKGLEyyqdk-----------ktfrgH 80  Methanocaldococ...
YP_003128736  18 EEHIKKGLEVIDfyi-krnYHKKVAKCLNVdnk-----vgKIILEVSYVLHDVAKNLKyyqdk-----------ktfrgH 80  Methanocaldococ...
2495949       18 IDHVNDMVKYWErik--yrYLKTIKRALEAlnikldiekvDEFMKILIKLHDIGKASKiyqraiind----qeklmgfrH 91  Methanocaldococ...
14590770      17 EDHIRKGLEIIEglylrrgYGHFLSKILNIdvk-----laEELLKKAYIFHDIGKCLEefqqrr----------ekfrfH 81  Pyrococcus hori...
YP_003436279  21 EEHVNGMIECWNkyl-kkkYAKSLTRVLRVnss-----llDEIVKFTLILHDAGKCTLyyqqnit--------spkryrH 86  Ferroglobus pla...
18311777      16 GRHIKRALTVWEklr--piYFPAVRRAIGVd---------LDVVEYAIVVHDLGKLAKayqvgr----------rgeytH 74  Pyrobaculum aer...
14521226      17 EDHIREGLKFIErmyisrnYGEFLSRVLNLrke-----kaEGLLRKAYIIHDVGKGLEefqskk----------qhfpyH 81  Pyrococcus abyssi
18311689      38 KAKLCRELDIELlerelysTYAALAARLSIdne-----lvRRLAGVAGYFHDIGKAIGayqsrfpsdkcgdckgvslagH 112 Pyrobaculum aer...
NP_578368     85 ELVSAYYAYNILkd--------mfKDETIAFIGALVVMMHHEPILMGqirsldkeeltpev--vldklrtfngvmegTES 154 Pyrococcus furi...
14601272      97 ELVSGALSLLAIekaadmagigrnDRGLYVFEVPLAVMMHHESISMGvlagelgerfvtlsv-aslmledyydgelwGLE 175 Aeropyrum pernix
YP_003458591  81 EFYSAYIAYNSIdtit----gdekKDNEIKKTIACAIALHHHTMVNRfkpits-------------------spkleMCE 137 Methanocaldococ...
YP_003128736  81 EFYSAYIAHNSIttlt----gdenKDKKIRKAIACAIALHHHTMVNRfnlied-------------------ssklkLCD 137 Methanocaldococ...
2495949       92 ELVSAYYTYHILlk--------kfGDKNLAFIGALTVMLHHEPIIMGqirnlkkkelta------evvldklkkfdgMIE 157 Methanocaldococ...
14590770      82 EVYSALVAREVFk-----------KYGDIGGVVSVAILLHHHNWIREkspkr--------------------prnlkLCN 130 Pyrococcus hori...
YP_003436279  87 EIVSAYLAYRLSed---------vFEKRIRHVISGSIFIHHEPILMGsi---------------------------sFQR 130 Ferroglobus pla...
18311777      75 EVVSAYFAYKGLep---------vVGDEIAAVVAAAVLLHHEPILTSayisglgerylpiyavrkmleehdlspacdPLA 145 Pyrobaculum aer...
14521226      82 EFYSALVAKEVLk-----------DFGKAGEIAVVAVSLHHHDWVRYekprk--------------------pdnleLDR 130 Pyrococcus abyssi
18311689     113 EVWSAWIAYFAVrespd---lkkeKSEVFARIIAMAVALHHSARRSIddvvldavhv-----------rptlddldlMFE 178 Pyrobaculum aer...
NP_578368    155 FIKSMIKEKLGVIp---------KVPSPTQEDVLREVirlsvlarhrp--dsgklrmvvgALLIPLVLCDYKGAKEREG 222 Pyrococcus furio...
14601272     176 RLARTVKNMGAVGdavvdvlkilSGSPPSRKEVLIALgrlkayslsgdtlsrlsararvaGILHPLVVADSIAANEGRK 254 Aeropyrum pernix
YP_003458591 138 EGIEVIQKYSPIDv---------NIPSEIPSDVIHSItelfkdsd--------rifrgvyLILVPLMVADNVSAILNRG 199 Methanocaldococc...
YP_003128736 138 DGIEVVKKYSPIEi---------NIPNEIISNIEHSImdlftnsd--------eifkgiyLILVPLMVADNISAILNRK 199 Methanocaldococc...
2495949      158 DFEDLIKKLIGYSig------diIKNDSNKDDIIRFViemsvrarhtp--nseklrfivgTLLLPLVMCDYKGAESREG 228 Methanocaldococc...
14590770     131 ECLSIIKKLSGEKip-------eEIPWRNWIEFTEEAeeimrt-----------nlrgvySILLPLVVADNYAAAVNRG 191 Pyrococcus horik...
YP_003436279 131 ERGVTLTDIRGRI----------EYPSSSRLEKVESTkimh----------------nnfKSLLESLLINHLNSNTIDK 183 Ferroglobus plac...
18311777     146 EAGDAVNKYPELKkeler-wgngGLTPRDMLEVVKEIvvqtavgdsa---rlhamrakaaAVLYPLVVSDSVAAHVGRS 220 Pyrobaculum aero...
14521226     131 ECACVIEKFMGVEip-------rKVPWIKPEEFSRWVvnvfss-----------niravyALLLPISLADNYSAMRNRG 191 Pyrococcus abyssi
18311689     179 LARAGLERYGLSFs--------qAAKAAARYHLLRFYditalrekl-----lstdpapaeLLVHVITTADNLDAVLNRC 244 Pyrobaculum aero...
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