2VQJ,2VQQ,2VQO


Conserved Protein Domain Family
HDAC4

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cd10006: HDAC4 
Click on image for an interactive view with Cn3D
Histone deacetylase 4
Histone deacetylase 4 is a class IIa Zn-dependent enzyme that catalyzes hydrolysis of an N(6)-acetyl-lysine residue of a histone to yield a deacetylated histone (EC 3.5.1.98). Histone acetylation/deacetylation process is important for mediation of transcriptional regulation of many genes. Histone deacetylases usually act via association with DNA binding proteins to target specific chromatin regions. Class IIa histone deacetylases are signal-dependent co-repressors, having N-terminal regulatory domain with two or three conserved serine residues; phosphorylation of these residues is important for ability to shuttle between the nucleus and cytoplasm and act as transcriptional co-repressors. HDAC4 participates in regulation of chondrocyte hypertrophy and skeletogenesis. However, biological substrates for HDAC4 have not been identified; only low lysine deacetylation activity has been demonstrated and active site mutant has enhanced activity toward acetylated lysines. HDAC4 does not bind DNA directly, but through transcription factors MEF2C (myocyte enhancer factor-2C) and MEF2D. Other known interaction partners of the protein are 14-3-3 proteins, SMRT and N-CoR co-repressors, BCL6, HP1, SUMO-1 ubiquitin-like protein, and ANKRA2. It appears to interact in a multiprotein complex with RbAp48 and HDAC3. Furthermore, HDAC4 is required for TGFbeta1-induced myofibroblastic differentiation.
Statistics
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PSSM-Id: 212530
Aligned: 6 rows
Threshold Bit Score: 900.941
Created: 30-Dec-2010
Updated: 2-Oct-2020
Structure
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Program:
Drawing:
Aligned Rows:
 
Conserved site includes 8 residues -Click on image for an interactive view with Cn3D
Feature 1:active site [active site]
Evidence:
  • Comment:Active center contains inhibitor and a catalytic Zn ion that coordinates side chain atoms of two aspartates and one histidine, and a water molecule.
  • Structure:2VQJ; human histone deacetylase 4 binds trifluoromethylketone inhbitor and a Zn ion; contacts at 4A.

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1                                                                                         
2VQJ_A          5 KPRFTTGLVYDTLMLKHQCTCGSSSSHPEHAGRIQSIWSRLQETGLRGKCECIRGRKATLEELQTVHSEAHTLLYGTNPL 84   human
2VQQ_A          5 KPRFTTGLVYDTLMLKHQCTAGSSSSHPEHAGRIQSIWSRLQETGLRGKCEAIRGRKATLEELQTVHSEAHTLLYGTNPL 84   human
P83038        645 KPRFTTGLVYDTLMLKHQCTCGNTNSHPEHAGRIQSIWSRLQETGLRGKCECIRGRKATLEELQTVHSEAHTLLYGTNPL 724  chicken
XP_002932071  656 KPRFTTGLVYDTLMLKHQCICGNTNSHPEHAGRIQSIWSRLQETGLRSMCECIRGRKATLEELQTVHSEAHTLLYGTNPL 735  western clawe...
NP_001034447  594 KPRFTTGLVYDTLMQKHQCMCGNSNIHPEHAGRIQSIWSRLQETGLRGQCECIRGRKATLEELQTVHSEAHVLLYGTNPL 673  zebrafish
2VQO_A          5 KPRFTTGLVYDTLMLKHQCTAGSSSSHPEHAGRIQSIWSRLQETGLRGKCEAIRGRKATLEELQTVHSEAHTLLYGTNPL 84   human
Feature 1                                                                                  ##     
2VQJ_A         85 nRQKLDskkllgSLASVFVRLPCGGVGVDSDTIWNEVHSAGAARLAVGCVVELVFKVATGELKNGFAVVRPPGHHAEEST 164  human
2VQQ_A         85 nRQKLDskkllgSLASVFVRLPCGGVGVDSDTIWNEVHSAGAARLAVGCVVELVFKVATGELKNGFAVVRPPGHHAEEST 164  human
P83038        725 nRQKLDskkllgSLTSMFVRLPCGGVGVDSDTIWNEVHSSGAARLAVGCVIELVFKVATGELKNGFAVVRPPGHHAEEST 804  chicken
XP_002932071  736 nRQKLEg-----SLASLFVRLSCGGVGVDSDTIWNEVHSSGAARLAVGCVVELASKVVSGELKNGFAVVRPPGHHAEEST 810  western clawe...
NP_001034447  674 -RQKLDs-----SVTPMFVRLPCGGIGVDSDTIWNEVHSSSAARLAVGSVVDLVFKVASGELRNGFAVVRPPGHHAEEST 747  zebrafish
2VQO_A         85 nRQKLDskkllgSLASVFVRLPCGGVGVDSDTIWNEVHSAGAARLAVGCVVELVFKVATGELKNGFAVVRPPGHHAEEST 164  human
Feature 1           ##                           # #                                              
2VQJ_A        165 PMGFCYFNSVAVAAKLLQQRLsVSKILIVDWDVHHGNGTQQAFYSdpsVLYMSLHRYDDGNFFPGSGAPDEVGTGPGVGF 244  human
2VQQ_A        165 PMGFCYFNSVAVAAKLLQQRLsVSKILIVDWDVHHGNGTQQAFYSdpsVLYMSLHRYDDGNFFPGSGAPDEVGTGPGVGF 244  human
P83038        805 PMGFCYFNSVAIAAKLLQQRLnVSKILIVDWDVHHGNGTQQAFYNdpnVLYISLHRYDDGNFFPGSGAPDEVGTGAGVGF 884  chicken
XP_002932071  811 PMGFCYFNSVAIAAKVLQQRLnVEKTLIVDWDVHHGNGTQQAFYSdpnVLYISLHRYDDGNFFPGSGAPDEVGTGPGVGF 890  western clawe...
NP_001034447  748 PMGFCYFNSVAIAAKLLQQRLnVSKILIVDWDVHHGNGTQQAFYSdpnVLYLSLHRYDDGNFFPGSGAPDEVGIGPGVGF 827  zebrafish
2VQO_A        165 PMGFCYFNSVAVAAKLLQQRLsVSKILIVDWDVHHGNGTQQAFYSdpsVLYMSLHRYDDGNFFPGSGAPDEVGTGPGVGF 244  human
Feature 1                                                      #                                  
2VQJ_A        245 NVNMAFTGGLdppMGDAEYLAAFRTVVMPIASEFAPDVVLVSSGFDAVEGHPtPLGGYNLSARCFGYLTKQLMgLAGGRI 324  human
2VQQ_A        245 NVNMAFTGGLdppMGDAEYLAAFRTVVMPIASEFAPDVVLVSSGFDAVEGHPtPLGGYNLSARCFGYLTKQLMgLAGGRI 324  human
P83038        885 NVNMAFTGGLdppMGDTEYLTAFRTVVMPIANEFAPDVVLVSSGFDAVEGHPtPLGGYNLSAKCFGYLTKQLMgLAGGRV 964  chicken
XP_002932071  891 NVNMAFTGGLeppMGDAEYLAAFRTVVMPIAAKFSPDVVLVSAGFDAVEGHPaPLGGYNVSAKCFGYLTKQLMeLAGGRV 970  western clawe...
NP_001034447  828 NVNMAFTGGLeppMGDADYLAAFRSVVMPIANEFSPDVVLVSSGFDAVEGHPpPLGGYKLTAKCFGYLTKQLMgLAGGRL 907  zebrafish
2VQO_A        245 NVNMAFTGGLdppMGDAEYLAAFRTVVMPIASEFAPDVVLVSSGFDAVEGHPtPLGGYNLSARCFGYLTKQLMgLAGGRI 324  human
Feature 1              #                                                                          
2VQJ_A        325 VLALEGGHDLTAICDASEACVSALLGNELDPLPEkVLQQRPNANAVRSMEKVMEIHSKYWrcLQRTTSTAgrSLIEAQTC 404  human
2VQQ_A        325 VLALEGGHDLTAICDASEACVSALLGNELDPLPEkVLQQRPNANAVRSMEKVMEIHSKYWrcLQRTTSTAgrSLIEAQTC 404  human
P83038        965 VLALEGGHDLTAICDASEACVSALLGNELDPLPEkVLQQRANANAVHSMEKVIEIHSKYWhsLQRYASTVgySLVEAQKC 1044 chicken
XP_002932071  971 VLALEGGHDLTAICDASEACVSALLGNKLEPLPEsVLQQRPNGNAARSMENVIQIQSEYWpcLHITSSTVaySLIEAQKC 1050 western clawe...
NP_001034447  908 VLALEGGHDLTAICDASEACVSALLGNELDPIPEdILQQRPNANAIQSMEKVLEVQSKYWrsLQRSVSTLgySLREAQRC 987  zebrafish
2VQO_A        325 VLALEGGYDLTAICDASEACVSALLGNELDPLPEkVLQQRPNANAVRSMEKVMEIHSKYWrcLQRTTSTAgrSLIEAQTC 404  human
Feature 1                  
2VQJ_A        405 ENEEAETVT 413  human
2VQQ_A        405 ENEEAETVT 413  human
P83038       1045 ENEEAETVT 1053 chicken
XP_002932071 1051 ENEEAETVT 1059 western clawed frog
NP_001034447  988 ENEEAETVT 996  zebrafish
2VQO_A        405 ENEEAETVT 413  human

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