Conserved Protein Domain Family
LOTUS_3_TDRD7

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cd09974: LOTUS_3_TDRD7 
The third LOTUS domain on Tudor-containing protein 7 (TDRD7)
The third LOTUS domain on Tudor-containing protein 7 (TDRD7): TDRD7 contains three N-terminal LOTUS domains and three Tudor domain repeats at the C-terminus. It belongs to the evolutionary conserved Tudor domain-containing protein (TDRD) family involved in germ cell development. In mice, TDRD7 together with TDRD1/MTR-1, TDRD5 and TDRD6 forms a ribonucleoprotein complex in the intermitochondrial cements (IMCs) and the chromatoid bodies (CBs) involving in RNA processing for spermatogenesis. TDRD7 is functionally essential for the differentiation of germ cells. The exact molecular function of LOTUS domain on TDRD7 remains to be characterized. Its occurrence in proteins associated with RNA metabolism suggests that it might be involved in RNA binding function. The presence of several basic residues and RNA fold recognition motifs support this hypothesis. The RNA binding function might be the first step of regulating mRNA translation or localization.
Statistics
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PSSM-Id: 193588
Aligned: 7 rows
Threshold Bit Score: 108.651
Created: 21-Mar-2011
Updated: 2-Oct-2020
Structure
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Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
NP_055105     338 AGDFKEKVADLLVKytSGLWASALPKAFEEMYKVKFPeDALKNLASLSDVCSIDYISGn-pQKAILYA 404  human
CAG11537      112 SAEVCERIKEILHRcsHGLWASALPKLYVDTYKMPFPeHILDNLSLLLNICIVEYPLShdkTKAILYS 179  spotted green pufferfish
XP_001517953  137 EDDFKEKVAQLLAKysNGVWASSLPEMYEEAYKVKFPeHALQSLNSLTDICIVDCTTGn-pQKAVLHY 203  platypus
NP_001084569  331 KDELKEKISTILTKysNGLWYHALPKVFEDMFKQKLP-IEAFNLDSLTDICTVDLISEe-pFKAILYG 396  African clawed frog
XP_428047     207 SSDFKQNVVNILVKypCGLWADALPKLYQDAYQRKFPeGILNNLQLLSDVCVVDYVSNv-pQKAILYV 273  chicken
ABR24798      367 TTELKQKLRQLLNKysQGLWAHGLPQLFQEAFGCAFPqYVLEDLSLLADTCMVEYPMPdnrKRAILYT 434  zebrafish
CAF96462      361 SSDLKLKLEELLEKysNGLWAHALPKLFQDTYKTKLPkQVLENLHLLKDFCTVDYPMPdnpKRAILYR 428  Tetraodon nigroviridis
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