Conserved Protein Domain Family
LOTUS_2_TDRD7

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cd09973: LOTUS_2_TDRD7 
The second LOTUS domain on Tudor-containing protein 7 (TDRD7)
The second LOTUS domain on Tudor-containing protein 7 (TDRD7): TDRD7 contains three N-terminal LOTUS domains and three Tudor domain repeats at the C-terminus. It belongs to the evolutionary conserved Tudor domain-containing protein (TDRD) family involved in germ cell development. In mice, TDRD7 together with TDRD1/MTR-1, TDRD5 and TDRD6 forms a ribonucleoprotein complex in the intermitochondrial cements (IMCs) and the chromatoid bodies (CBs) involving in RNA processing for spermatogenesis. TDRD7 is functionally essential for the differentiation of germ cells. The exact molecular function of LOTUS domain on TDRD7 remains to be characterized. Its occurrence in proteins associated with RNA metabolism suggests that it might be involved in RNA binding function. The presence of several basic residues and RNA fold recognition motifs support this hypothesis. The RNA binding function might be the first step of regulating mRNA translation or localization.
Statistics
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PSSM-Id: 193587
Aligned: 6 rows
Threshold Bit Score: 119.072
Created: 21-Mar-2011
Updated: 2-Oct-2020
Structure
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Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
NP_055105     234 MDEVQNRIKEILNKhnNGIWISKLPHFYKELYKEDLNqgILQQFEHWPHICTVEKPCSg--------gQDLLLYP 300  human
CAF96462      230 RQQVQGRVREILGKysNGFWVSKLPQIYRELYKQDLPteAIKDLESWSHVCTVSTSHLtvektcnsnpSELLLYP 304  Tetraodon nigrovir...
XP_002194456  194 VNELQSRIKELLSKysSGVRLSKMPEIYQEMYWEDLSteVLYQLENWPHVCTVEKIHGgd-------aIDGFLYP 261  zebra finch
NP_001084569  219 LPVIQNNLKELLNKhsNGLWLSKLPQLYKETYKQDLGgeVLKQVPSWTHICTVQKLVSsg-------hTEIVIYA 286  African clawed frog
XP_428047      98 ISEIQNRIKEILSKyrNGVWLSKIAQVYEETYREELSttVLRQLEHWPHVCTVEKVRTgd-------qTYRILYP 165  chicken
ABR24798      206 VELVQGRIKQLLQKysSGVWLSKIPQLYKSMFQEELH--IIQEVEKWTHICTVEKPGSnn-------iVDRLVYP 271  zebrafish
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