2DLZ


Conserved Protein Domain Family
SH2_Vav_family

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cd09940: SH2_Vav_family 
Click on image for an interactive view with Cn3D
Src homology 2 (SH2) domain found in the Vav family
Vav proteins are involved in several processes that require cytoskeletal reorganization, such as the formation of the immunological synapse (IS), phagocytosis, platelet aggregation, spreading, and transformation. Vavs function as guanine nucleotide exchange factors (GEFs) for the Rho/Rac family of GTPases. Vav family members have several conserved motifs/domains including: a leucine-rich region, a leucine-zipper, a calponin homology (CH) domain, an acidic domain, a Dbl-homology (DH) domain, a pleckstrin homology (PH) domain, a cysteine-rich domain, 2 SH3 domains, a proline-rich region, and a SH2 domain. Vavs are the only known Rho GEFs that have both the DH/PH motifs and SH2/SH3 domains in the same protein. The leucine-rich helix-loop-helix (HLH) domain is thought to be involved in protein heterodimerization with other HLH proteins and it may function as a negative regulator by forming inactive heterodimers. The CH domain is usually involved in the association with filamentous actin, but in Vav it controls NFAT stimulation, Ca2+ mobilization, and its transforming activity. Acidic domains are involved in protein-protein interactions and contain regulatory tyrosines. The DH domain is a GDP-GTP exchange factor on Rho/Rac GTPases. The PH domain in involved in interactions with GTP-binding proteins, lipids and/or phosphorylated serine/threonine residues. The SH3 domain is involved in localization of proteins to specific sites within the cell interacting with protein with proline-rich sequences. The SH2 domain mediates a high affinity interaction with tyrosine phosphorylated proteins. There are three Vav mammalian family members: Vav1 which is expressed in the hematopoietic system, Vav2 and Vav3 are more ubiquitously expressed. The members here include insect and amphibian Vavs. In general SH2 domains are involved in signal transduction. They typically bind pTyr-containing ligands via two surface pockets, a pTyr and hydrophobic binding pocket, allowing proteins with SH2 domains to localize to tyrosine phosphorylated sites.
Statistics
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PSSM-Id: 198193
Aligned: 22 rows
Threshold Bit Score: 165.159
Created: 28-Feb-2011
Updated: 2-Oct-2020
Structure
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Program:
Drawing:
Aligned Rows:
 
phosphotyrosinehydrophobic
Conserved site includes 4 residues -Click on image for an interactive view with Cn3D
Feature 1:phosphotyrosine binding pocket [polypeptide binding site]
Evidence:

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1                      #                 #                         # #                    
2DLZ_A         12 DYTAYPWFAGNMERQQTDNLLKSHASGTYLIRERPAe-----aERFAISIKFNdEVKHIKVVEK----DNWIHITEAKKF 82   human
P54100        663 DLSVHLWYAGPMERAGAEGILTNRSDGTYLVRQRVKd-----tAEFAISIKYNvEVKHIKIMTS----EGLYRITEKKAF 733  Norway rat
Q45FX5        825 EISEFLWYMGEMERAKAESTLKGTPNGTFLVRYSKNr------KQTAISLSYKnDVKHMIIEQNs---DGKVYLDEDYIF 895  nematode
NP_001041223  825 EISEFLWYMGEMERAKAESTLKGTPNGTFLVRYSKNr------KQTAISLSYKnDVKHMIIEQNs---DGKVYLDEDYIF 895  nematode
NP_001073343  106 DYSCQPWYAGAMERLQAETELINRVNSTYLVRHRTKe-----sGEYAISIKYNnEAKHIKILTR----DGFFHIAENRKF 176  human
EDP36943      768 EVVGQQWYRGPMKRWDSEELLRGTPDGTFLVRFSSAq------QKYVISISFNgDVKHTKVEQSp---EGRYYLDESTMF 838  agent of lymp...
EFX75144      598 DLERYPWFSGEMTRTAAEAVLRNTPLGTYLLRFKSNd------NTYALSLRTGeEIKHMKVVHTsd-nGGRYFLSESFLF 670  common water ...
ADY41261      773 DIMGQEWYQGSLERREAENRLRGTPDGTFLVRFSNTq------QKYVVSISFCgDVKHTKVEQSi---DNKVYLDESTMF 843  pig roundworm
XP_001946064  636 TLTEHLWFVGEMDRDRATNLLESESDGTYLVRIRPQgptrpveTVYALSLKSNnQVKHMKICERledgISSFYLSEKRFF 715  pea aphid
EFO97346      839 EIAGFRWYMGEMERTKAESTLRGTPNGTFLVRYSKNr------KQTAISLSYKnDVKHMIIEKNq---DGKMYLDEDYIF 909  Caenorhabditi...
Feature 1                                       
2DLZ_A         83 DSLLELVEYYQCHSLKESFKQLDTTLKYPY 112  human
P54100        734 RGLPELVEFYQQNSLKDCFKSLDTTLQFPY 763  Norway rat
Q45FX5        896 NSTVELVQYYRSNNLIEIFAALDTCLKNPY 925  nematode
NP_001041223  896 NSTVELVQYYRSNNLIEIFAALDTCLKNPY 925  nematode
NP_001073343  177 KSLMELVEYYKHHSLKEGFRTLDTTLQFPY 206  human
EDP36943      839 SSVVELINYYRENNLRESFETLNTTLRHSY 868  agent of lymphatic filariasis
EFX75144      671 RSIVELINRYEHNSLRESFKGLDAYLKVPW 700  common water flea
ADY41261      844 SSVVELINYYREHNLRESFETLNTTLRQPY 873  pig roundworm
XP_001946064  716 PNLVELVNFYEKNSLSENFTGLDIKLKWPF 745  pea aphid
EFO97346      910 NSTVELVQYYRDHNLIEIFQALDTCLKVPY 939  Caenorhabditis remanei

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