Conserved Protein Domain Family
NGN_plant

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cd09890: NGN_plant 
Plant N-Utilization Substance G (NusG) N-terminal (NGN) domain
The N-Utilization Substance G (NusG) protein and its eukaryotic homolog, Spt5, are involved in transcription elongation and termination. NusG contains a NGN domain at its N-terminus and Kyrpides Ouzounis and Woese (KOW) repeats at its C-terminus in bacteria and archaea. The eukaryotic ortholog, Spt5, is a large protein comprising an acidic N-terminus, an NGN domain, and multiple KOW motifs at its C-terminus. Spt5 forms an Spt4-Spt5 complex that is an essential RNA polymerase II elongation factor. The bacterial infected plants contain bacterial DNA, such as NGN sequences, that can be used to clone the DNA of uncultured organisms.
Statistics
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PSSM-Id: 193579
Aligned: 10 rows
Threshold Bit Score: 128.239
Created: 10-Dec-2010
Updated: 2-Oct-2020
Structure
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Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
XP_002276763  100 QWWVVRVSrv----sGQESAERLARSLArnfp------------didFKVYVPsvqvkrklkn----------------- 146  wine grape
ABK22888       80 QWWMLLVPrn----sERLVAEDLSKAFPsefp------------dieFQAYLPeipsrrklkn----------------- 126  Sitka spruce
XP_002988471   88 QWYTLRVFtn----nEAESMEALRSTLEaefp------------dakFEVWSPiiptesvvr------------------ 133  Selaginella m...
NP_566346      97 QWWAVRVSrl----rGHETAQILARALArqfp------------emeFTVYAPsvqvkrklkn----------------- 143  thale cress
Q94GE2        105 QWWLVRVSma----pGTDYVDLLTKAISrryp------------elsFKIYNPsiqvkkrlkn----------------- 151  Oryza sativa
XP_001768244  118 VWYMVSTPkk----aEHEAAEQLHIQFAqmfp------------gmkYEVLTPsipsfrklks----------------- 164  Physcomitrell...
XP_002508090  318 GWYMCEVPeg----rEQQAADKIDAIARtekt-----------egepITTWVPrvpnddfcvarsdaegktridllrsvp 382  Micromonas sp...
CBJ28432      221 HWYLLRCFatyevrcRNSVESYLEGAGLgd---------------rvEEIWVPcrqvpkqvg------------------ 267  Ectocarpus si...
ABO96758       27 GWYMLEVPet----rENQAKAAILALNGtkltr----------gqgeVVAWVPrvpadgfyvaeedavgk----selelc 88   Ostreococcus ...
EFN57035      128 HWWALRVKag----rEKQVAEALERLVVellppleaaeeggaprqrtIETWVPkkslrvwspktgkmgs------kvlry 197  Chlorella var...
XP_002276763  147 --gsisvkpkpLFPGCVFLRCVLnketHDFIRECDGIGGFVgskvgnt----------------krqinkpRPVSVDDIE 208  wine grape
ABK22888      127 --gsyseskkrMFPGYLFIRCPLnkeiHDFIRNTPRVRGFVgrkvgsm----------------irqmikpKPVPIAEME 188  Sitka spruce
XP_002988471  134 --gksrfamkaMLRGHIFLRCVLeapvYRHAMNERSVFCFVgafpykmkagydt----kmmkggypdaripAPVPSYQIE 207  Selaginella m...
NP_566346     144 --gsisvkpkpVFPGCIFIRCILnkeiHDSIRDVDGVGGFIgskvgnt----------------krqinkpRPVDDSDLE 205  thale cress
Q94GE2        152 --gsistkskpLHPGLVFLYCTLnkevHDFIRDTEGCYGFIgatvgsi----------------krqikkpKPIPVEEVE 213  Oryza sativa
XP_001768244  165 --grysdsrvrLYPGCLLIRCVMnrdvYNMIRSNLRIYNFFgtkaqgts---------------vsdmiipSAVSIIEIE 227  Physcomitrell...
XP_002508090  383 pagdgpgdetlPFPGYVLVHMKLsqttLNSLEEIYGVKGFAssgvtkygs------------trrqtgerpRPVPAMQLE 450  Micromonas sp...
CBJ28432      268 --tkvtfkeepIYQGYIYCKVKMslevRDIVNDMDRIVGFVgearde------------------dkklipERMEPEDIE 327  Ectocarpus si...
ABO96758       89 qmveeedmiemLQPGYVLVRCALtqelMDAFDDLRSVRGFAtggssrfgkkkyeklntpltmddqiprmieRCLPVVKTE 168  Ostreococcus ...
EFN57035      198 patypavlasgDNGGWVLARTVLdselYSRVKANPSFIAWVhvevftlhsel---------vsgtkhleipRPCPQQVLD 268  Chlorella var...
XP_002276763  209 AIF 211  wine grape
ABK22888      189 ETF 191  Sitka spruce
XP_002988471  208 ALR 210  Selaginella moellendorffii
NP_566346     206 AIF 208  thale cress
Q94GE2        214 SII 216  Oryza sativa
XP_001768244  228 ELF 230  Physcomitrella patens subsp. patens
XP_002508090  451 TMM 453  Micromonas sp. RCC299
CBJ28432      328 GIK 330  Ectocarpus siliculosus
ABO96758      169 ADI 171  Ostreococcus lucimarinus CCE9901
EFN57035      269 DVK 271  Chlorella variabilis
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