2OUG


Conserved Protein Domain Family
NGN_SP

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cd09886: NGN_SP 
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N-Utilization Substance G (NusG) N-terminal domain in the NusG Specialized Paralog (SP)
The N-Utilization Substance G (NusG) protein is involved in transcription elongation and termination. NusG is essential in Escherichia coli and is associated with RNA polymerase elongation and Rho-termination in bacteria. Paralogs of eubacterial NusG, NusG SP (Specialized Paralog of NusG), are more diverse and often found as the first ORF in operons encoding secreted proteins and LPS biosynthesis genes. NusG SP family members are operon-specific transcriptional antitermination factors. The NusG N-terminal (NGN) domain is quite similar in all NusG orthologs, but its C-terminal domains and the linker that separate these two domains are different. The domain organization of NusG and its orthologs suggest that the common properties of NusG and its orthologs and paralogs are due to their similar NGN domains.
Statistics
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PSSM-Id: 193575
Aligned: 15 rows
Threshold Bit Score: 93.2016
Created: 14-Jan-2011
Updated: 2-Oct-2020
Structure
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Program:
Drawing:
Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
2OUG_A         3 SWYLLYCkrGQLQRAQEHLERQa------------VNCLAPmitlekivr-------gkrtavsepLFPNYLFVEFDPev 63  Escherichia col...
Q9ZET1        10 DWVALLVrvNHEKVAAAQLGKHg------------YEFFLPtytppkss----------gvkaklpLFPGYLFCRYQPl- 66  Myxococcus xanthus
YP_444769     60 VWRVFYTraRAEKKAEQRLEDRr------------IEVLVPkktemrqws-------drkkevtepLFRNYLFARVGEk- 119 Salinibacter ru...
YP_827380     18 QWFALSVtpKLTQLVLMALEHKg------------YECFTPlqsstrkrr-------dqvadmqvpAFPGYVFARIDVrf 78  Solibacter usit...
ZP_01752831   32 LWFVLKVqpMKEFEVEMWLGQQeg----------vLEAWLPtnkawrnqarg----hrrkvqyrqkIAPGYVFACVERri 97  Roseobacter sp....
YP_002498771   7 TWFVVQTgpARERRVVELLAREg------------ADTWLPlfrvttvrr-------grkvddfekVFASYVFAGLDEet 67  Methylobacteriu...
YP_002500912  56 RWHAAVTfpGCEVKVRDAMQLRr------------IDTVLPmvrfwrirs-------rkrfvaerpLLARTVIFGLDHa- 115 Methylobacteriu...
ZP_05113116   28 EWVVIHTnpKCETRARDGLLGAg------------LLAFLPmeqierrhgrgrkvkpaqtytvirpMFPRYLFAGMDVkk 95  Labrenzia alexa...
ZP_05113492   30 DWIVVRSnpNCESRAAESLSAAg------------LIAWLPmlpvlrknsr-----trnefdksrpLCTRYLFVALDRyk 92  Labrenzia alexa...
ADJ21968       2 TWYAIRTnpQREFLLAGRYDENgewrpgvlekkgyDQVFCPtetkfrktikk---grrvsipvlypMFCGYIFVGGRFs- 77  Hyphomicrobium ...
2OUG_A        64 ---ihTTTINATRGVSHFVrfg-----asPAIVPSAVIHQLSV 98  Escherichia coli O157:H7
Q9ZET1        67 ----nPYRIVRAPGVIRLLggd-----agPEAVPAQELEAIRR 100 Myxococcus xanthus
YP_444769    120 ----dRIRVLRTNGIVRCVhfd-----gePAQLREDTAQRLKK 153 Salinibacter ruber DSM 13855
YP_827380     79 r-lpvLVTPGVRGIVGYGRq---------PAPVDDGEIFALRR 111 Solibacter usitatus Ellin6076
ZP_01752831   98 a--wdLLQRRSNGKVLGVVgyn-----grPLPVPEEQMRAMKK 133 Roseobacter sp. SK209-2-6
YP_002498771  68 mrrrgTSVLFDCDHVLDVLgv------drPLPFPADALQVLAD 104 Methylobacterium nodulans ORS 2060
YP_002500912 116 -----CQDIAGIEGLERVVrga----svgWADLPEQDVYDLRL 149 Methylobacterium nodulans ORS 2060
ZP_05113116   96 g--qsVDQIRACDGVKGVLsf------dkTGAVARVAVSDLIK 130 Labrenzia alexandrii DFL-11
ZP_05113492   93 g--qsTSEVVVCDGVEKVLsfde---enrPHIVPKAQMRVIVE 130 Labrenzia alexandrii DFL-11
ADJ21968      78 -----WLELMAENYITAAVgfpdefgrrrPAPISDYEMAKLRE 115 Hyphomicrobium denitrificans ATCC 51888
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