1PTH,1CVU


Conserved Protein Domain Family
prostaglandin_endoperoxide_synthase

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cd09816: prostaglandin_endoperoxide_synthase 
Click on image for an interactive view with Cn3D
Animal prostaglandin endoperoxide synthase and related bacterial proteins
Animal prostaglandin endoperoxide synthases, including prostaglandin H2 synthase and a set of similar bacterial proteins which may function as cyclooxygenases. Prostaglandin H2 synthase catalyzes the synthesis of prostaglandin H2 from arachidonic acid. In two reaction steps, arachidonic acid is converted to Prostaglandin G2, a peroxide (cyclooxygenase activity) and subsequently converted to the end product via the enzyme's peroxidase activity. Prostaglandin H2 synthase is the target of aspirin and other non-steroid anti-inflammatory drugs such as ibuprofen, which block the substrate's access to the active site and may acetylate a conserved serine residue. In humans and other mammals, prostaglandin H2 synthase (PGHS), also called cyclooxygenase (COX) is present as at least two isozymes, PGHS-1 (or COX-1) and PGHS-2 (or COX-2), respectively. PGHS-1 is expressed constitutively in most mammalian cells, while the expression of PGHS-2 is induced via inflammation response in endothelial cells, activated macrophages, and others. COX-3 is a splice variant of COX-1.
Statistics
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PSSM-Id: 188648
Aligned: 22 rows
Threshold Bit Score: 649.711
Created: 4-Sep-2007
Updated: 2-Oct-2020
Structure
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Program:
Drawing:
Aligned Rows:
 
heme bindingsubstratehomodimer
Conserved site includes 19 residues -Click on image for an interactive view with Cn3D
Feature 1:heme binding site [chemical binding site]
Evidence:
  • Structure:1PTH: sheep PGHS-1 binds heme, contacts at 4A
  • Citation:PMID 8121489

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1                                                                   #                    
1PTH_A        66 HFLLTHGRWLWDFVNAT-FIRDTLMRLVLTVRSNLIPSPPTYNIahDYISWESFSNVSYYTRILPSVPRDCptpmgtkgk 144 sheep
1CVU_A        58 HYILTHFKGVWNIVNNIpFLRSLIMKYVLTSRSYLIDSPPTYNVhyGYKSWEAFSNLSYYTRALPPVADDCptpmgvkgn 137 house mouse
NP_001086946  76 HYILSHFKGVWNIVNSMsFLRDAIMRYVLTSRSHLIDSPPTYNShyTYKNWETYSNLSYYTRSLPPVERDCptpmgvkgl 155 African clawed ...
NP_001020675  77 HYILTHFKSLWNIINNVsFLRNGIMRYVLTSRAHLIDSPPTFNAdyGYKSWEAYSNLSYYTRTLPPVPRDCptpmgvagk 156 zebrafish
AAF93169      80 HFMLTHFGWFWWIVNNVqFIRDPIMRAAYFSRTDFIPVPHVYTSyhEYATMEAHYNRTHFARTLPPVPKNCptpfgvsgk 159 black sea rod
XP_002123273  79 HHYMTNYSLLWKLVNNIsWLQKKLMAVVLKIRTNYVYEPSPYVGmdSYPTWDSYINKTVYARTLPPIPQDCptpmgtkgp 158 Ciona intestinalis
ACP28169      77 HNLLTSKKWLWNIVNSVpFLANAVMKKVYTMRSDMIDSPPTYTSehEYITVDANFNYSVYTRTLPPVPKECptpmgvwgk 156 Pacific oyster
NP_001161191  75 HYILTHFKGVWNIINNIsFLRDTIMRYVLTSRSHLIDSPPTYNSdySYKSWEAYSNLSYYTRSLPPVGHDCptpmgvkgk 154 chicken
XP_002586987  76 HHLLTNYKWLWNIVNRIpFLSKFIMRAVYKIRSATVDSPPMYHTghDYTSWDTYADRSYYTRALPPVPPGCptpmgtagr 155 Florida lancelet
ADB65785      97 HILLTSDLWVWKIINNIgFLQDAAMKYIFLSRGDQVDSPVRFESdhSYITLDAYYNETYYARTLPPIPEHCptpmgvkgv 176 Caprella sp. KV...
Feature 1                                      #   #   #  ###                                    
1PTH_A       145 kqLPDAEFLSRRFLLRRKFipdPQGTNLMFAFFAQHFTHQFFKTSgkmgPGFTKALGHGVDLGHIYGDNLERQYQLRlfK 224 sheep
1CVU_A       138 keLPDSKEVLEKVLLRREFipdPQGSNMMFAFFAQHFTAQFFKTDhkrgPGFTRGLGHGVDLNHIYGETLDRQHKLRlfK 217 house mouse
NP_001086946 156 keLPSSKLVVEKFLMRRKFipdPQGTNVMFAFFAQHFTHQFFKTDmakgAAFTKALGHGVDLNHVYGESLERQHKLRlmK 235 African clawed ...
NP_001020675 157 keLPDVKMLAEKLLLRRKFipdPQRTNLMFAFFAQHFTHQFFKSDmkkgPAFTTALNHGVDLAHIYGQNLDRQHKLRlfK 236 zebrafish
AAF93169     160 kiLPPAEEVANKFLKRREFiadHRNTSWLFMFFAQHFTHQFFKTVh--hSPAFSWGNHGVDVSHIYGQGVERENKLRafK 237 black sea rod
XP_002123273 159 ktLPDIKVLRSLLFQRNKFepcPMRTNVFFAFFAQHFTHQFFKTNti-kGMPFQWGEHSVDLSHVYGHTIQRQHELRshI 237 Ciona intestinalis
ACP28169     157 kvLPPAEDIVKAFFIRKEFipePLGTSALFPYFAQHFTHMFFKTDlk-kGPQFQWGGHGVDVSHVYGKDRDSENNLRsfK 235 Pacific oyster
NP_001161191 155 keLPDSKLIVEKFLLRRKFipdPQGTNVMFTFFAQHFTHQFFKTDhkkgPGFTKAYGHGVDLNHIYGETLERQLKLRlrK 234 chicken
XP_002586987 156 keLPSPQYIAETFLARRRFipdKRRTNVLFNFMAQHFTHQFFKTDfk-kGAGRTWGDHGVDLSHIYGETVERQHQLRsfT 234 Florida lancelet
ADB65785     177 keLPNLDLLMKKVFARKEFipdPHDTNLLFQYYAQHFTHQFFRTNyt-mCPQFTKGNGGVDVSNIYGLTEQHRRAIRmnS 255 Caprella sp. KV...
Feature 1                                                         #                              
1PTH_A       225 DGKLKYQMLNGEVYPPSV-EEAPVLMHYPrgip--pqsQMAVGQEVFGLLPGLMLYATIWLREHNRVCDLLKAEHPTWGD 301 sheep
1CVU_A       218 DGKLKYQVIGGEVYPPTV-KDTQVEMIYPphip--enlQFAVGQEVFGLVPGLMMYATIWLREHQRVCDILKQEHPEWGD 294 house mouse
NP_001086946 236 GGKLKYQMIDGDMYPPTV-KSSGVDMAYPphvp--ehvQFAVGQEVFGLVPGLMMYSTIWLREHNRVCDILAGEHPEWDD 312 African clawed ...
NP_001020675 237 DGKLRYQILDGEVYPPTV-SEVQVDMHYPphvp--esrRFAVGHEAFGLVPGLMMYATIWLREHNRVCDILKQEHPDWDD 313 zebrafish
AAF93169     238 DGKLKSQMINGEEYPPYLkDVDGLKMQYLenta--eeqKFALGHPFFSMLPGLFMFATLWLREHNRVCMILRKEHPHWED 315 black sea rod
XP_002123273 238 DGKLKVFETNGEVFPPLT-ESANVTMSGEklm---rgrKFAIGHPGFGAFPSFFVIATLWLREHNRVCDILKDLHPDWDD 313 Ciona intestinalis
ACP28169     236 DGKLKFQIIDGEEWPPLT-SEADVPMGYPkgme--ktkQFALGHSFFGLLPGLFMYGTIWLREHNRVCDILKKEHPEWND 312 Pacific oyster
NP_001161191 235 DGKLKYQMIDGEMYPPTV-KDTQAEMIYPphvp--ehlQFSVGQEVFGLVPGLMMYATIWLREHNRVCDVLKQEHPEWDD 311 chicken
XP_002586987 235 DGKLKFQRVEGEVYPPSL-ADAPVHMIYPpyvp--egkRFAIGHEFFGLLPGLFVYSTVWLREHNRVCDVMKELHPDWDD 311 Florida lancelet
ADB65785     256 DGKLKYQVINDEHYPPYLrDVQGIEMDYPphipitednKFALGHPFFALLPGLFVFSTIWMREHNRVCDVLKNQHPDWDD 335 Caprella sp. KV...
Feature 1                                                                #  ####  #              
1PTH_A       302 EQLFQTARLILIGETIKIVIEEYVQQLSGYFLQLKFDPeLLFGAQFQYRNRIAMEFNQLYHWHPLMPDSFRVGPQDYSYE 381 sheep
1CVU_A       295 EQLFQTSKLILIGETIKIVIEDYVQHLSGYHFKLKFDPeLLFNQQFQYQNRIASEFNTLYHWHPLLPDTFNIEDQEYSFK 374 house mouse
NP_001086946 313 ERIFQTARLILIGETIKIVIEDYVQHLSGYHFKLKFDPqLLFNQRFQYQNRIAAEFNTLYHWHPLLPDTFAINEKEYSYP 392 African clawed ...
NP_001020675 314 ERLFQTSRLILIGETIKIVIEDYVQHLSGYYFKLKFDPeLLFNERFQYQNRISSEFNTLYHWHPLMPDDFHIQDEVYNYQ 393 zebrafish
AAF93169     316 ERIYQTAKLIITGETIKIVIEDYINHLANYNMKLRYDPqLVFSRNYDYDNRIHLEFNHLYHWHPFSPDQFNISGTTYTIN 395 black sea rod
XP_002123273 314 ERLFQTARLILTGETLKIIVEDYVQHVSGFHFQLSYDPeILHKSTFSYNNQIHAEFHILYHWHMLMPDFIELGEHVYPLK 393 Ciona intestinalis
ACP28169     313 ERLFQTAKLVILGETIKIVIEDYVKHLSNYNYDLIFNPeLLFGEPFQYQNRIALEFNHLYHWHPLMPDEINISGTMYNLK 392 Pacific oyster
NP_001161191 312 EQLFQTTRLILIGETIKIVIEDYVQHLSGYHFKLKFDPeLLFNQRFQYQNRIAAEFNTLYHWHPLLPDTFQIHNQEYTFQ 391 chicken
XP_002586987 312 ERLFQTARLILTGETINIIINEYVQHLSGYNFDLFWDPeLLFSDQFQYQNRIFVEFNHLYHWHPLMPDQFHINGSTYGMK 391 Florida lancelet
ADB65785     336 ERLYQTAKLIITGEVIKITIEDYVQHLSQYKVDLKFKPqVVHGTRFQFDNRINAEFNHLYHWHPLIPDGIQVEDKYYSLM 415 Caprella sp. KV...
Feature 1          #                                   # ##  #                                   
1PTH_A       382 QFLFNTSMLVDYGVEALVDAFSRQPAGRIGggRNIDHHILHVAVDVIKESRVLRLQPFNEYRKRFGMKPYTSFQE-LTGE 460 sheep
1CVU_A       375 QFLYNNSILLEHGLTQFVESFTRQIAGRVAggRNVPIAVQAVAKASIDQSREMKYQSLNEYRKRFSLKPYTSFEE-LTGE 453 house mouse
NP_001086946 393 QFLYNNSVMIDHGLTQMVESFSRQSAGRVAggRNFPAAITRVAVASIEHSREMRYQSLNEYRKRFMLKPFETFEE-LTGE 471 African clawed ...
NP_001020675 394 QFLFNTSILTDYGVNSLVESFNKQIAGRVAggRNVAPAVLRVAIKSIENSRQMRYQSINAYRKRFNMKPYRSFEE-MTGE 472 zebrafish
AAF93169     396 DFMYHPEIVVKHGMSSFVNAMSSGLCGKMSh-HNHGQYTLDVAVEVIKYQRKLRMQSFNNYRRHFGLPAYKSFEE-MTGD 473 black sea rod
XP_002123273 394 ELLFNVDPVVEIGMETVLKQLSNQFAGKVVggRNQGPELVAVVELALKQTRQMRMCSFNKYRERFGMKPYTSFEE-LTGE 472 Ciona intestinalis
ACP28169     393 EFMFHPELVVKHGMRNFVDSLSKQRAGLFGp-RNHGPVTIPVVTELIKHGRTLRLQSFNQYRKRFDMEPIKSFEE-LTGE 470 Pacific oyster
NP_001161191 392 QFLYNNSIMLEHGLSHMVKSFSKQSAGRVAggKNVPAAVQKVAKASIDQSRQMRYQSLNEYRKRFMLKPFKSFEE-LTGE 470 chicken
XP_002586987 392 DYLFNTDLVFKHGFGTTVDAMSRQIAGQIGp-KNIGPVNLKVAVETIKHERNLRMQGLNQYRKRFGIPPYKTFLElTGGD 470 Florida lancelet
ADB65785     416 DMAFSTKSVFTHGLDKFIESMATSRAGKLSh-SNHPLVTLPVLKKMMENGRKLRYQGINEYRKRFALKPFKDFMD-LTGD 493 Caprella sp. KV...
Feature 1                                                                                        
1PTH_A       461 KEMAAELEELYGDIDALEFYPGLLLEKCHPNsIFGESMIEMGAPFSLKGLLGNPICSPEYWkASTFGGEVGFNLVKTATL 540 sheep
1CVU_A       454 KEMAAELKALYSDIDVMELYPALLVEKPRPDaIFGETMVELGAPFSLKGLMGNPICSPQYWkPSTFGGEVGFKIINTASI 533 house mouse
NP_001086946 472 KEMSAELEKLYGDIDAMELYPGLLVEQPRPGaIFGETMVEMGAPFSLKGLMGNPICSPEYWkPSTFGGSVGFDIVNSASF 551 African clawed ...
NP_001020675 473 KEMAAELEEMYGDVDAVELYAGLLVEKPRSNaIFGETMVEMGAPYSLKGLMGNPICSPEYWkPSTFGGKVGFEIVNSASL 552 zebrafish
AAF93169     474 PKLAAELKEVYGDVNAVDFYVGFFLEKSLPTsPFGITMIASGAPYSLRGLLSNPVSSPTYWkPSTFGGEVGFDIVKTASV 553 black sea rod
XP_002123273 473 TEVAALLRNLYYDIDALELFVGYFVEHRRNRqVLGATMLEMGAPYSLKGVFGNPIGSPAWWkPSTFGGEVGFNIIKTTNL 552 Ciona intestinalis
ACP28169     471 KKMAKQLEDFYGDVNAVEFYVGLIMEKRRHNsMFGDSLVQIGAPYSVKGLMANPICSPKYWkPSTFGGEVGFNIVKTSSL 550 Pacific oyster
NP_001161191 471 KEMAAELEELYGDIDAMELYPGLLVEKPRPGaIFGETMVEIGAPFSLKGLMGNTICSPEYWkPSTFGGKVGFEIINTASL 550 chicken
XP_002586987 471 AEMADQLEEAYGDVDAVELYVGLMVEQPAPGsVTSETIIEMGGPFSVKGLLSNPLCSPQWWkPSTFGGEAGFRMVKTATL 550 Florida lancelet
ADB65785     494 EALAKDLQELYGHVDAVEFYVGLLTEKDSPS-LTPLTMVNVGGPWSVKGLIANPICSPHWWkPSTFGGDVGFDIVNSASL 572 Caprella sp. KV...
Feature 1                     
1PTH_A       541 KKLVCLNTk-TCP 552 sheep
1CVU_A       534 QSLICNNVk-GCP 545 house mouse
NP_001086946 552 QKLICNNVr-DCP 563 African clawed frog
NP_001020675 553 QNLVCNNVngPCP 565 zebrafish
AAF93169     554 DKLFCRNIagDCP 566 black sea rod
XP_002123273 553 KNFICRNVk-GCP 564 Ciona intestinalis
ACP28169     551 KKLFCENIkgECP 563 Pacific oyster
NP_001161191 551 QKLICNNVk-GCP 562 chicken
XP_002586987 551 KDLFCRNT--AGP 561 Florida lancelet
ADB65785     573 EKLFCNNMksKCK 585 Caprella sp. KV-2010a

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