Conserved Protein Domain Family
Csb3_I-U
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cd09764: Csb3_I-U 
CRISPR/Cas system-associated RAMP superfamily protein Csb3
CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; RAMP superfamily protein; Might be a catalytically active RNA endoribonuclease
Links
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Statistics
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PSSM-Id: 187733
Aligned: 5 rows
Threshold Bit Score: 426.176
Created: 13-Apr-2011
Updated: 2-Oct-2020
Structure
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Aligned Rows:
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PubMed ReferencesClick to see Conserved Features Help
Sequence Alignment
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Format: Row Display: Color Bits: Type Selection: 
YP_002968715   5 RIPADYDDAFSHMLGFGLASILEDAVEDRIcrLWWSGRHTLMVETNDEite---meCAHiVRAHAErw-hKSQWLNARGS 80  Bifidobacterium...
ZP_07695890    4 KFSADASDAFSHLLMVGLASILEDDDTARCcrFRWLDTLRAFEFETSDeln--idqMAAiISEHAKrw-aQSLPLNSEDD 80  Bifidobacterium...
YP_003687349   4 EITGTLDTAITHLALVGLANILQEAGAHRVr-LWWQDGAVARPTLQWEgpdageavLAH-ARRHAD----PACWLQARRP 77  Propionibacteri...
BAI65051       5 TIAGDYTSALTHFALYGLSLMVEQKHPGTVt-VGWSQEGQPRAQMHAEgvs--eeeIAEcVHSYVSslaaEDSWVNVDQS 81  Rothia mucilagi...
YP_003985000   5 TLAGDYTSALTHFAQYGLASLAEQHHPQGVtlGWTREAVPKAQLTVEGada--ytlAGYiHELAKQlc-ePESWGQINNT 81  Rothia dentocar...

YP_002968715  81 Yagkg-------ktvATLSPRIGTVAGREEWVALERDRRDAIDSLRTTLDERYIGALGEPSYWSLNRTKatpe-----iq 148 Bifidobacterium...
ZP_07695890   81 YtivsesntsgktlhATMSPRLSGLSVPCGWRKLQKDREAAIDSMRTFGDYRYFGALGQPSYWSGEQSHklr-------- 152 Bifidobacterium...
YP_003687349  78 Aped---------ghALFSPRLKPPTDDEGWFELEELREHFLDAGLTRLDQRMIVNLGEPGYWVRQDGQpr--------- 139 Propionibacteri...
BAI65051      82 Ygag--------keaAVFSPFSPRIRGIDAEKYPDDWASHQKTRQAHLDALMERDDLLSLLWISGLGEPaywrfeakapr 153 Rothia mucilagi...
YP_003985000  82 Ygtm---------nvSPFSPRVGEISSPLDWKRHQKIRQDMIDKLTQEKDYLSLCWISSLGEASYWFPEknkkip--key 150 Rothia dentocar...

YP_002968715 149 qkFGASLWEMTPRNRGNEFVTMRLLKLASIITARTAEKVHSGLFGltnVDELAGTEDSHTPTGLKVPSRTDNARAWCALF 228 Bifidobacterium...
ZP_07695890  153 sdFGASRWEMVTRNRGQEFIGGRLLPLSQCVAARSVENIRDGLLGtkiEDEIGNNKSTSRAATGLHAPAKTDNARAWCAL 232 Bifidobacterium...
YP_003687349 140 pdHAASRWEMKTRNRGEEFIGQRLAPLAREVSTWTAGKVLDGLGGr-aVNDVVGKNKPDSRTPTGLSSPGPTDNALAWCS 218 Propionibacteri...
BAI65051     154 pdHGASRWEMKTRNKGQEFVKDRLRLMCADLATWEPSAMLSGITGqtlHDSLDKKPDSRTGTGFTVPQPTDTALAFCALV 233 Rothia mucilagi...
YP_003985000 151 qrLGASRWEMADRGGGREFVRYRLRRMCEEVVTWSTEKITNGIIGt-eINDPIGGEKLLTATGFTTPRKTDVSLALLAMT 229 Rothia dentocar...

YP_002968715 229 GFSNCPVYRSVHy-----eTSPTAGFIRHDsgggpSWHVVLPLTEKSWTLAKYRSVIRSYALDYVgenalhldq--dsls 301 Bifidobacterium...
ZP_07695890  233 MGVAAFPTRVTTrgddmarDSSAALFQIKGp----VRFAILPLFDQYWTTAKYRSVVRSEALARFgiqkils-------t 301 Bifidobacterium...
YP_003687349 219 LWGISAFTLVPKsi----gVSATAGAVPPArs--yPRLLVVPVVADPISPVLWTALARSRELLSAfsd------------ 280 Propionibacteri...
BAI65051     234 GIANFPVIHQIHr------IGVTPGAYPYNal--hPRLMVLPVSSGRVTPARLRTVLRSHPYRRVvdevgkamergslsp 305 Rothia mucilagi...
YP_003985000 230 GMSWFPVIHMANh------LSITPGAWPSNdv--aPENLVLPLSIENIKPARLRTVLRSHTFADIvnyvcheesetgvsd 301 Rothia dentocar...

YP_002968715 302 dstvaLYAELCRWLRDQGLRYCMLFQrh-gtQAKSPEYWLLRGQLI 346 Bifidobacterium animalis subsp. lactis Bl-04
ZP_07695890  302 dtemqLVDVSSDWLEEKGVAACCIFNqfvsdNASAPERWLEQGEII 347 Bifidobacterium dentium ATCC 27679
YP_003687349 281 --dpvRSVDARQLLVRRGVIGACSFPldksdNDSAPERTLLRGTLH 324 Propionibacterium freudenreichii subsp. shermanii...
BAI65051     306 difvsELADEKAILREKGVQAFVAFPiakvgSDSAPERQVLKGSAI 351 Rothia mucilaginosa DY-18
YP_003985000 302 treilKAYGSREQLKAHGMDAVVRFPvktvkTASNAYRYIQEGKLV 347 Rothia dentocariosa ATCC 17931
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