Conserved Protein Domain Family
Cas8a2_I-A

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cd09751: Cas8a2_I-A 
CRISPR/Cas system-associated protein Csa8a2
CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Zn-finger domain containing protein, distant homologs of Cas8 proteins; signature gene for I-A subtype; also known as Csa4 family
Statistics
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PSSM-Id: 187882
Aligned: 6 rows
Threshold Bit Score: 307.524
Created: 23-Nov-2009
Updated: 17-Jan-2013
Structure
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Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Q8U337      4 VVPMFSGYYSRVLNTHIMYGIVESaLRAGVTNL-HVVPTGEGYEIHSRYLDcrlknqedlegegckllleglRDALEEIi 82  Pyrococcus furiosus
Q8U338      3 FNEFKTPQIDPIFDLYVAYGYVESlIRGGAKEA-TLIPHGASYLIQTDVSNeefr--------------hglVDALSEMl 67  Pyrococcus furiosus
Q57830     24 VMLFETPGYNEILDLYIAYGVVEClVREGVENL-RFFPIGNKYCIVVEEPTnvnikn---------riekgmLNALEDMl 93  Methanocaldococcus...
Q9YCM8      2 VCILYTPGHNLYTDTLILYGIARLlAWSGKVSG-EVERVGERYVVKVDADNchpvsql-------pesirlaLRLLQEEq 73  Aeropyrum pernix
Q8ZZL4      2 LKEIYTPGHDVFADTLIMHGVVRHlAASGIVEG-YVERLGERYKISFEGEPralad-----------iesveLLLFEIE- 68  Pyrobaculum aeroph...
YP_920755 115 TPTLYTPGHSPYTDTLIMHALARA-AWGARDAAlRVRGTGFEYVLETSVDArtla--------------yelRRTFEEV- 178 Thermofilum penden...
Q8U337     83 mtHYAMgfRSKKFn---NVILSNTVISNGAFIDPpqn----vqRYYRELeailnnldIKSLK---STKSLIDKk------ 146 Pyrococcus furiosus
Q8U338     68 slHIALa-RHSPRe--gGKLVSDADFSAGANINNvy-----wdSVPRNL--------EKVMKdleKKRSVKGT------- 124 Pyrococcus furiosus
Q57830     94 slHKAI--GKYIStkedIKIISDVDFSAGANINNvy-----wdGIPKTLek-----iKENIKk--GKLSTKSK------- 152 Methanocaldococcus...
Q9YCM8     74 --QQVFl-GDEGTfy-sDLYRLARGSKVGESILNnl-----riRVAAKIlsndanilEKYVSp--GHKKLQGEfrgrkkg 142 Aeropyrum pernix
Q8ZZL4     69 --RYVVd-GEEPV----GRLRKIFDANINISATRswlaqlseaLVNAELsvf---tlDHKAKf--REGRTASRr------ 130 Pyrobaculum aeroph...
YP_920755 179 --HAAFl-DRQRL----GRLFQDKDVRLLDSALDp-------eGLRAFL--------EGELSr-pGHAGAEGRgf----d 231 Thermofilum penden...
Q8U337    147 vLRAPQQLDPTLNQWL----SFYKQEe--GISRITNLEYALAWVGfy--yYSSVHKFKRGSsQIVEIIQYPp----nEEV 214 Pyrococcus furiosus
Q8U338    125 -ATIPITLMPSAGKYMl--kHFGVQGg--NPIKVDLLNYALAWVGfh--yYTPYIKYAKGDtTWIHIYQIAp----vEEV 193 Pyrococcus furiosus
Q57830    153 -NTVPLTLMPAAGKYMp--kIYGVKGg--NPIKIDDSNYALAWIGfh--yYAPYINISDNRaTYIHIYAIKp----lEEL 221 Methanocaldococcus...
Q9YCM8    143 lVTLVLPLGPLYGKFYt--wSLKPRRlteKPYVVCPYCYFLSVLGf---hYGSYTYQKDGEsKVVTLSPHH------ASL 211 Aeropyrum pernix
Q8ZZL4    131 lSTVYLTLSPIYGKYFi--eNRVAKEn--KAFGVCHTCFAYLNIGflygaTTIVIITRDGR-RVVQLTPAPrg---rISI 202 Pyrobaculum aeroph...
YP_920755 232 gLTFKLPLMPSAGKYLhtdlTRKPKYe-aKEYRVCKYCAALAALG-----LASSVYVARGA-RVLVVTLAFsgeagyDAL 304 Thermofilum penden...
Q8U337    215 EMWELLLIKDLATKI---VQGNdfhwk--isseyGLLKTLLLTELPpsteeVPGLSKFTVViYGQe-SQQGkg--wrIFR 286 Pyrococcus furiosus
Q8U338    194 DMISILSLKDLKMHLphyYESNldfli---nrrlALLYHLLHSESLga-leLFTEKEFVIHsYTLerSGNNqa--irSFE 267 Pyrococcus furiosus
Q57830    222 GLIEILALKDLKKKIn-nYQLGkykff--vnkklALLYHLTHTESIsa-leIVTKKNFSVVsYTLenVDNNqa--irSFG 295 Methanocaldococcus...
Q9YCM8    212 EDVLALSQSFEAASI---WMPAilryrnsltgpgLSLYVLSLGETL-----LSSSSHFEVL-YGEfsVDNN------TFR 276 Aeropyrum pernix
Q8ZZL4    203 ADLALLQRLTEGYLVrsqEMPTl----------aYPLYWLSTGETL-----YATEESLDILvWVT--EKRGnfqrvtDAM 265 Pyrobaculum aeroph...
YP_920755 305 GGYYDFLQGEEAKDVl-gVLGPrvdnvp-erllaQLAVALLTRNALe---aLDHAGATWRV-YAVk-FDTGravqvrGFY 377 Thermofilum penden...
Q8U337    287 TLELPVVWDFIGYLKar--afYETMkfvKILNKLERtikesq--edilrEISHQLYSALtnrdeMGFYSAFRVLkr---a 359 Pyrococcus furiosus
Q8U338    268 EEEIGKLMDFLWKLKrr--dfYHAI---KFIDDLLKka----------tEGALALIDAImnerlEGFYTALKLGkka--g 330 Pyrococcus furiosus
Q57830    296 EYDLSKLMDFLWYLKat--dfYNTI---QFVDNILRgd----------lEVSLTFIDGIlyddlDAVYSAIRKLk----- 355 Methanocaldococcus...
Q9YCM8    277 VVDVGRLPGVLLTSIai--ikYHMAswpRLIDFIARrdpg------llhRIALTLSFEVgn--eYALYGILREIlsllnd 346 Aeropyrum pernix
Q8ZZL4    266 ALDLSRIMEFIAEVK------NKTRgwpKFVECLALeg----------pEILAQLTEVVlf--gGDEYTVVRALst---s 324 Pyrobaculum aeroph...
YP_920755 378 DVEVDSVVGAMSSLArvddasYSKLr--DMLKQLARatgadspragyalEALSRLFEFFetaspDSLYGFARSVyc---- 451 Thermofilum penden...
Q8U337    360 gYPLDPe----LVNAIAQYLSER 378 Pyrococcus furiosus
Q8U338    331 vVSSRE-----IVAALEDIICER 348 Pyrococcus furiosus
Q57830    356 sVRISPl----IIQSILEWFGNF 374 Methanocaldococcus jannaschii
Q9YCM8    347 dKSQEArylakQLDRLAEGLAMV 369 Aeropyrum pernix
Q8ZZL4    325 gKCAEDw---rQVDILAEILFTW 344 Pyrobaculum aerophilum
YP_920755 452 aYEGKA-----GFHGVVESLVRA 469 Thermofilum pendens Hrk 5
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