Conserved Protein Domain Family
Cmr3_III-B
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cd09748: Cmr3_III-B 
CRISPR/Cas system-associated RAMP superfamily protein Cmr3
CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; RAMP superfamily protein; This protein is a subunit of Cmr complex
Links
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Statistics
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PSSM-Id: 187879
Aligned: 22 rows
Threshold Bit Score: 235.352
Created: 23-Nov-2009
Updated: 25-Oct-2021
Structure
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Aligned Rows:
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PubMed ReferencesClick to see Conserved Features Help
Sequence Alignment
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Format: Row Display: Color Bits: Type Selection: 
Q746D9         3 IEPRDPLIVRDGRPFtnspg--arakSLPFPLPQTLAGAYRTrralleglpl--------------peraeevlrwGLRG 66  Thermus thermop...
Q2JN53         6 LSPLDVWMFRDAKPFapger--awanSSFPPSGHTLAGAVQAylgq--------------------------pltlRLRG 57  Synechococcus s...
Q6ZEA9         6 LTPLDILLLRDAKPFtpgdr--awagSIFPPNGHTLAGAVRSllpq--------------------------nqtiSLIG 57  Synechocystis s...
A0B6W4         6 ITPVDSWFFRDGRPFhlgea-tsdvgGLFPPSAFTVVGAIRAhlarsmgwregkwse----eicrvlgdgydlaglRFRG 80  Methanosaeta th...
Q1AZD9         6 IEALDTLFFGDGSPFdagetgqievtGVFPPSPTTVVGALRAafarelgwrcgdwpe----nvkaklgdgqrlgplRFAG 81  Rubrobacter xyl...
ZP_02003405   11 FAPIDTWFFREARPYdsigg--tqlsSIFPPSARTVAGAVRTligentevdwndfhqnenhhlrkeigdskqlgqlKLVG 88  Beggiatoa sp. PS
ZP_01691099    5 IDALDTLFFRDGKPFslgee--twaeGLFPPGPGVFYGALRSlyfslhphemgk-----------agqtndptahlRIKG 71  Microscilla mar...
ZP_03725244    8 LTPQDAWFFRDGRPYnhgesnqadalSQFPPSPRTITGALRAalarangwngtgrwip--elntafgkdadnlaklQFCA 85  Opitutaceae bac...
YP_001391469   6 IKPYDNTFFRLGNNFefkis--nviqTKNVAYPSTFFGAIFTailanndefresf--------lnipgntdhleilNIKQ 75  Clostridium bot...
ZP_01732552    6 LTPTDVLLLRDAKPFtpger--awagSMFPPNGHTIAGALRGllgk--------------------------kddfQIKG 57  Cyanothece sp. ...

Q746D9        67 PLLAEege------ggwRLLAPRPLDalkl-----------geaLYPLRPLelpqgagtnlpegl--------------- 114 Thermus thermop...
Q2JN53        58 PFLCHd----------eRLYFPAPLHledgfplvp-vpwlderdPYFHCHWdptrpaplvslrp---------------- 110 Synechococcus s...
Q6ZEA9        58 PLLYHk----------eTLYFPRPLGfvgktpllplpwhdatspLRSQMLWdktqpaplapl------------------ 109 Synechocystis s...
A0B6W4        81 PLLCRegd------rgpEMLYPAPLNllgk----------rndsGYEMRLLrpgeevecdlgr----------------- 127 Methanosaeta th...
Q1AZD9        82 PYVTRg----------gEPLFPAPLYlmk-------------sgERFTTRLrprdtpletdmgevrlp------------ 126 Rubrobacter xyl...
ZP_02003405   89 PYLLNd----------nQRLYPVPLIlleadvk-----rksevkKNTNTRIkfkskntstqkqfvrlhpgykpvncdlgh 153 Beggiatoa sp. PS
ZP_01691099   72 IYFLVn----------nKLHIECPLDyvqe----------kqdeAPCLLQLqalpdsiaatsfq---------------- 115 Microscilla mar...
ZP_03725244   86 PFLIRe----------nNPLWSAPLHflgkre-------kksdkWTPAAFLrpaatrtltdqgpi--------------- 133 Opitutaceae bac...
YP_001391469  76 IYLYAek--------qgMIYIKAPKDifvnn---------nevkFGNFKEIkdgessikyd------------------- 119 Clostridium bot...
ZP_01732552   58 VFFAResktegtnqpemTLYLPRPLGfvgdqs-------liplnWNPTLPLnhifwdhtkpcpl---------------- 114 Cyanothece sp. ...

Q746D9       115 ----spvglpspalkekPAPLPaf-wYWESFLewllqdapa------------gfaprghegPVPETRTHVALDPaaqta 177 Thermus thermop...
Q2JN53       111 -----veeepersqsskKKKTGgy-lPFEVVQkalegkgwd-------------lsqavkppLKYEVRPHNTLQVskrqv 171 Synechococcus s...
Q6ZEA9       110 ------etvsqtdikrdEKQARtw-lPLDVMMgylqtgaikped-------warpededsqpWTMESRPHNSIEAgtrqv 175 Synechocystis s...
A0B6W4       128 ------vrlptaekidgMKQLSgy-vNGDQLKqvlrgevpe------------grvipreelWGTEYAVGLERERdtrta 188 Methanosaeta th...
Q1AZD9       127 -evvpveddsgkeakgfKPLADay-lTKSGTEralrwelpqe-----------eevvkvsdlWEGEGRLGIRRDPekrtt 193 Rubrobacter xyl...
ZP_02003405  154 vylpeitalknkvienaKPIENaw-lTAENLQyilegeiph-------------dveylsklVDTENRLGIALNRktrsv 219 Beggiatoa sp. PS
ZP_01691099  116 -----lshwlappqeaqVENIEgl-iDERTLKeyalenhsd------------rgvspwsdyLQVEPKVGIGRSKltnat 177 Microscilla mar...
ZP_03725244  134 ----flpekthtdldglKTAESaw-lTTTGLAtvlngelpas-----------teiffsgdlWERENRVGLKRDAitkqv 197 Opitutaceae bac...
YP_001391469 120 -------yyleepdgneLERADnyfvSIKEFYdkyrykvldn-----------idlkqedeiFAKNIKTGIALDKstgiv 181 Clostridium bot...
ZP_01732552  115 -----ttskqaenneteEKNYRqy-lPYSAVLhylengkfekddlllpnvdknhpdyeppkpWIIETRSHNAIQTdtkqv 188 Cyanothece sp. ...

Q746D9       178 reGFLFQTSg-LEFVrg-----rrRLALVLWPEGpep--------------egVFPLGGERRLAFWQkggpgvpplp--- 234 Thermus thermop...
Q2JN53       172 reADGYFVEtcIRLQpg------wSLALSIEGWDpdreawdp----lpltqeaVLRLGGEGHCALLApcpklqeqwqq-- 239 Synechococcus s...
Q6ZEA9       176 keSDGYFVEngIRLKen------wSLAIAVDPTThqqlqs--------lpqplSMRLGGEGHRVTLVhrpaldqqwqr-- 239 Synechocystis s...
A0B6W4       189 keAHLYSINr-IRLVrg------vHLIMGVEGIDeglle---------kldgaVMPIGGEGRMGCVEmlspgkgvse--- 249 Methanosaeta th...
Q1AZD9       194 qeDALYLASh-VRPRrg------vALAMGVAGYEgpa--------------pgLMTLGGESRMAYLEpceislpea---- 248 Rubrobacter xyl...
ZP_02003405  220 eeHQLYQSQh-IRIRyy------vNLQVGVTVGGinealh--------pketgQIRFGGDGRLADVTistslptql---- 280 Beggiatoa sp. PS
ZP_01691099  178 leGLLYRVGm-VRPVfgek-ghysALSMVLDFEGlpames--------lpakgFFRLGGEGKAVSYEvfeptiql----- 242 Microscilla mar...
ZP_03725244  198 geGDLYRPGf-IRLArh------vALGVGIAGVPdgmk-----------apetLFPFGGEGRLAICKnapdfpnnapfpp 259 Opitutaceae bac...
YP_001391469 182 keSLLYTIEq-TEFKnitedyysnDWSFVVEYAIdndflkkqgypkvknldkgELKLGGETKVCTYEiiensdinefk-- 258 Clostridium bot...
ZP_01732552  189 keADGYFVEntIRMLpr------wRLAIAVEQSTheeiekls----lkkenllTLRLGGEGHRVVMErcetldsqwnk-- 256 Cyanothece sp. ...

Q746D9       235 -----------eevvagllrHRAARLVFLTPAFL---------GEAYLPKgraf----------------qgasVVAAVV 278 Thermus thermop...
Q2JN53       240 ---------lqalsqaafcqAGRALAYLATPGVFikkvegrslCRAWPWEwrlatphp---------ahpltgpLVSVAT 301 Synechococcus s...
Q6ZEA9       240 ---------lqtlsdqnyqqRQKAIAYLMTPGIFergrdgvstCRPYPWEwklth---------------nqgsFISMAT 295 Synechocystis s...
A0B6W4       250 ----------irqeigpidgRVRFTLVHITPAFL---------GRWPRPGesipg---------------vpgeVVSACV 295 Methanosaeta th...
Q1AZD9       249 ------------pelepdggRLRYTVTLLTPMRPq--------DEGWQRPgggla--------------glpgeVVSACV 294 Rubrobacter xyl...
ZP_02003405  281 ------------kspdftkaKNGIFLTLLTPANL---------GKNWLLPnftetddekgakiwngtikgveltIVCAVL 339 Beggiatoa sp. PS
ZP_01691099  243 -------------psqvvaqANIFKLVLLTPALF---------DNGWCPAsihpqtgkgrl--aidnqktveveLLAAAT 298 Microscilla mar...
ZP_03725244  260 aparetfstnanattddatrKVEFAIIALTPLTA---------LKNLAETlgs------------------gaeIVSACV 312 Opitutaceae bac...
YP_001391469 259 ----------sktsqgflkpGEKLKVILTSDSYF---------TKSFAELfnd------------------emkILALVN 301 Clostridium bot...
ZP_01732552  257 ---------lqaqsnenfktEGRKVSYLITPGVFerdkngqamCRPYPWEwklahtvnnn-----qnqddphrvLVSVAT 322 Cyanothece sp. ...

Q746D9       279 GRPvavsg--wnlkEGKPKpsr------raVPAGSVYFVRFPEAWGEGEVRDwagkvwfqnlseeeqDRRDGFGLAALG 349 Thermus thermoph...
Q2JN53       302 GKPvaisgrlrvdrPPEQRqmslpapqvfaAPPGSIYYLEQPAPLNQEEPELedgrl-----nvfhrWRLLGYSELLWL 375 Synechococcus sp...
Q6ZEA9       296 DRAvaisp-rirdrQRNPGhsipa-pqvfaAPPGTVYYLNQPQGLFADQDNApkh---------lqqTRKLGYSHLLWV 363 Synechocystis sp...
A0B6W4       296 GRAlrigg--wdsvNRRPVelk------pfIPPGSVWFCEAEADELNDVMSVsri----------geYTGFGFGEIALG 356 Methanosaeta the...
Q1AZD9       295 GKPvligg--wdteRKRPLdle------phLPAGSTWFMETEAGEVDRVLEMhagh--------igaKTEWGYGQILIG 357 Rubrobacter xyla...
ZP_02003405  340 GKSirdgg--wdlaNNQPRqvi------slVPAGSVWFCKVRKGNPADLQGYhi-----------gqETELGRGELAVG 399 Beggiatoa sp. PS
ZP_01691099  299 GKPvpvgg--fdmhTQLPKpml------kaVPAGAVYYFRLTNAEDAPLLQQkfspa-----slsdqRANEGFGLALFI 364 Microscilla mari...
ZP_03725244  313 GKPvkigg--wdslKNEPLple------pfHPAGSVWFCRASNDAFDAIHSKhgtwl------geprHTAHGLGQILIA 377 Opitutaceae bact...
YP_001391469 302 DKPiyigg--fdvaKNEEKamy------kgYSAGTVLLLQNESGKDINLQKYldmk--------lrnKLKNGFNEYICV 364 Clostridium botu...
ZP_01732552  323 AKAlpisc-rmrdkYDGDKsipap--qvfaAPPGSQYYLEQPKMLFQEQENAsik---------akrWRQLGYSEMLWI 389 Cyanothece sp. C...
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