Conserved Protein Domain Family
Csx1_III-U

?
cd09747: Csx1_III-U 
CRISPR/Cas system-associated protein Csx1
CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Protein of this family often fused to HTH domain; Some proteins could have an additional fusion with RecB-family nuclease domain; Core domain appears to have a Rossmann-like fold; loosely associated with CRISPR/Cas systems; also known as Cas02710 family
Statistics
?
PSSM-Id: 187878
Aligned: 10 rows
Threshold Bit Score: 308.138
Created: 23-Nov-2009
Updated: 2-Oct-2020
Structure
?
Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
?
Format: Row Display: Color Bits: Type Selection:
Q53W22        13 EPLEVALAEHAPQGVVFLAS---------------QASHPv--AAELV---RDYGGSfr---------hHTLLLEDAESL 63  Thermus thermop...
Q2LQW9        14 EPLRKSIAEHQPERIIFFAS---------------HDSITk--AGEVL---EQVNPKpk---------cEWEITEDPNSL 64  Syntrophus acid...
Q746E8        62 EATALAILGAGAERVYVLHT---------------PESARf--LPRLR---QDTGKD------------LYPVEIGKSDV 109 Thermus thermop...
Q2FL70        24 RSCSFAIHSYRPARVIYFCS---------------EKSEGt--IEPVH---QALTDQfgis----pppfSICMISDPNDF 79  Methanospirillu...
O27148        25 HGLFQSITNKRPDKIVFFGS---------------EMSKKt--VEYIK---EEAEAQgkdl-----peyKFIEILDIDGV 79  Methanothermoba...
YP_001039605  10 EPLVLSISVLKPEKVLILYT---------------DKSHHl--LDDVI---EFTKLKps---------qYVATDVDAENP 60  Clostridium the...
YP_001277335  38 DTPALLIAGLNPERVAFLLT---------------DQSRPk--LDEVR---QRLAQVadqaplrcspddWFCPDGDYSSV 97  Roseiflexus sp....
YP_001528626  34 APVIESIRHFRPVFVSFFAS---------------QETLDk--VMEIKgaiKAAGLElq---------sEVTLAENVNDL 87  Desulfococcus o...
YP_001432773  38 DTPSLLIAGLNPERVAFLLT---------------DQSREkglVAQCR---ARLEQVadqvslrclpdaWFCPNGDHSNV 99  Roseiflexus cas...
ZP_01665261   16 QPIIDSVTKHQPDYIVFLCTarkdgdegsydsiykDTTQPprkCPKCGh-tETTTNKalasalglsndrFETLVVEADKP 94  Thermosinus car...
Q53W22        64 MEAYQKALLALRKalew--eataIVADLTGGTKPMAAGLVLALTGRg-----VVFSYVGGea-rDPGTGRVLAGKERlRL 135 Thermus thermop...
Q2LQW9        65 FECYKTARCCVERamhagfspeeTIVDYTGGTKVMTAALILATVGCp-----YRFNYVGGetrtKSGLGVVENGCEQmYS 139 Syntrophus acid...
Q746E8       110 EAIYREVKRLLEKhpe-----vpVALDLTSGTKAMSAGLAAAGFFFqrfypkVRVVYVDNed-yDPELRRPRAGTEKlRI 183 Thermus thermop...
Q2FL70        80 TGCFELIYGVASLyhe-----eeVVIEASSGTREMIMAAEIVSFLTr-----NPVSHVTG----EKSGGMIIPGTERiRE 145 Methanospirillu...
O27148        80 KELFDKFEEQMKIygd-----qeVIIDYTSGTKTMTSIAFVMGILYr-----KELSVITGf---RDRNGTVQSGTES-NI 145 Methanothermoba...
YP_001039605  61 LQLYRKIKDVYEKwgr----prnIYVDFTGGTKSMAAGCAMAGSAIg-----AKLIYIAGn--fLTDLRKPEPGSEKlCY 129 Clostridium the...
YP_001277335  98 LRVYTGLRTVLDRwrdl--erheIAVDLTGGKSTMTVGLAKAAHVLr-----LAAVYVDS----DYADGRPVPGTQRlAT 166 Roseiflexus sp....
YP_001528626  88 LHCHKKAEEAVARvigrghsrdsVIVDYTGGTKNMSVALSLAAITHg-----FSFSYVGGtrrtRGNVGTVENGAEKvFQ 162 Desulfococcus o...
YP_001432773 100 LSVYTGLRAVLDRwndl--erheIAVDLTGGKATMTVGLAKAAHVLr-----LASVYVDS----DYADNRPIPGTQRlAT 168 Roseiflexus cas...
ZP_01665261   95 FDTYKKACDLIEKfqhn---gwrVIADYTGGTKSMSAGLLLAAVEYk----dIVISLVAGp---RKDLIKIRDGEQVcRR 164 Thermosinus car...
Q53W22       136 LEdPTARLglKEWAGFTRAWNALNLGMALAELESLLRrdlspsearfygaMKGVVEGLMEWDRFRHREAWERLSvhlpla 215 Thermus thermop...
Q2LQW9       140 SMsPWLIFaeEERRQVILLFNRGRYSSVGEIIRMALTrklpgeitdyfkfVKYFAEGFLFWDQFNHKRAADCLSkgiknl 219 Syntrophus acid...
Q746E8       184 LPnPHEALaeVDALFAKELYGKGEFGQAAAYFRGMVGrtgnq----ayalYALLAEMYRAWRALDFGEALKAGRkllgql 259 Thermus thermop...
Q2FL70       146 MV-LFAAYdrLQLHRAIYAFNQNHFGSSLRLLEGITSlpe-------rdiYYTLFNGYWHWDKMDYEKAYKYLEhvpdld 217 Methanospirillu...
O27148       146 EQnTYQIYdkLNIRRFKELFNHGRFETALQILENDVVnher------keaYIKLTRAYLHWDLFEHEEALDYLNsd---- 215 Methanothermoba...
YP_001039605 130 IDdPYTVFgdLEREQAISLFNKMDYVSAYRIFEELEQrvpgt---keysaLKYISKAYNAWDSLDISGAADNLSkcyeiv 206 Clostridium the...
YP_001277335 167 PEdPYTVFgdLEAAEARRLHNNHDYASAEKIFRDLAQrvpdn---pdyaiYADLSTAYLAWDSFAPHQAGDALDrvlara 243 Roseiflexus sp....
YP_001528626 163 SVnPWDFLavEERKKIALLFNRHQFKAAGQLCADLAEknvnrr--lvykkIGLMIEGFHEWDLLRHKTAVRRFEkceide 240 Desulfococcus o...
YP_001432773 169 PEdPYLVFgdLEAAEACRLHNHHDYAGAERVFRDLARrvpdk---qdyaiYADLSAAYLAWDSFVPQPAAMALDrvlahn 245 Roseiflexus cas...
ZP_01665261  165 VNnKAVAF--RQSRQALAMAREWNYPAAINLLDELCHdgldde-vpdfnrLRNLCRGFGYWDTFIYDKAYEYLKpfgn-- 239 Thermosinus car...
Q53W22       216 -----------lavaeAWGHGAKVRVLKGLEALLPHLKGIVeag--pkpTFLLLQDLLANAERrAALGRFDDALARLYRA 282 Thermus thermop...
Q2LQW9       220 t--------eylerhdHSQWNSFTEDVRHCFDILNDLLLKTnnl--kkfHTVLIDDLLNNARRrIAAGCFDDAAARIYRS 289 Syntrophus acid...
Q746E8       260 sqnv---wlnhplnarREALEAQVALLEAVGRFLKARDFALke-----gVYGLARTLLHLAQE-AKEEAAVLAALYAYRA 330 Thermus thermop...
Q2FL70       218 ----------ilipqnRKFLKKLLELDRMDDTILNRKERLRvrq---qkYIYMLIDLLHNAKRrIDGERYDDALARLYRV 284 Methanospirillu...
O27148       216 ---------------eVNSLEELEDVIKRNKSILGEIISSRngrr-kykYRPFLPDLLANSRRrASEGRYDDAAARLYRA 279 Methanothermoba...
YP_001039605 207 vtegk-idksfvlnshIEKLEKQLGVIRVLEKIHCSEEAAKnksvifdnIGYLIANLYQNAMRrEKQEKYEMASLLLYRI 285 Clostridium the...
YP_001277335 244 dlpadlqparsvlqaqRETLAQLTAINRRLTQRKTPPADALtalrdlnqGLALLGSLHSAALRrAAQERYDVAALMRYRC 323 Roseiflexus sp....
YP_001528626 241 -----------llddeNKGVQAFAKAAKALLPFLADAAGCGek-----pCPAYILDLFANAERrFDEGKTDDAVLRLYRI 304 Desulfococcus o...
YP_001432773 246 vlpdalqarrvtleaqRQALTQLTAINQCLTNRHSQAADALaalndldqVLALLGSLHGAALRrAAQERYDVAALMRYRC 325 Roseiflexus cas...
ZP_01665261  240 ------------dgkiQPLIIKLSTAWRGLQWYSSPTSGKFp-------GYVLVYDVLANAERrAARGSYDDAIARIYRA 300 Thermosinus car...
Q53W22       283 LELAVEADVHeRLGFSLKDPrtwpe----gfpegLRERILKPRGLMDL--------------LDAAFDLDLAFGEQgtla 344 Thermus thermop...
Q2LQW9       290 LELYGQLTFEkVTGCSTSNVprnk------ipetIREVYVQKHTDSQSgvi--------klpLQATFEFLHTADIDvghr 355 Syntrophus acid...
Q746E8       331 LELLLQERLA-LLGRRAEAPglspe-----eaeaLRKALAELLGVSPEevrlp-----aklgLLDLLAFLRLKGDEalgr 399 Thermus thermop...
Q2FL70       285 VELISQVLLL-SYGIDDNEEkirfadlkkmlrkqDISTYARKSDRNGIir----------igLRYKFLLLEDLGMKgad- 352 Methanospirillu...
O27148       280 LELIAQILIEeEYGDETDSInp----------dkYAMSTRAALKLDGKkh----------laLKNAYRLLECEGHDvgra 339 Methanothermoba...
YP_001039605 286 LEIVEQKRLW-NYGVDTSDAdftklc--edekvlLEKANKIIRSVKGFnewkql---dkkisLLAGYILLAAVGDDiikt 359 Clostridium the...
YP_001277335 324 LELLSQHRLA-TYGIWTAEPsfdaal---rrvpdLDDRYRQAQRDQGFrkqyplpssersiaLFDGYMLLQALDDPlvr- 398 Roseiflexus sp....
YP_001528626 305 VEMAGQQRLMdTNGIDTSNAapek------lpagLKSIYEEKYMDPESkti--------kisMAAGYSLLKEMGDDlglq 370 Desulfococcus o...
YP_001432773 326 LELLSQHRLA-TYSVWTAAPsfdaal---qrvpdLNQQYRQAQCEQGFrkvydl--persiaLFEGYMLLQALDDPlvr- 398 Roseiflexus cas...
ZP_01665261  301 LEMYAQFCLL-AKGLNSSNLdtak------lpepIRPDYEARRNAKGEiq----------igLVEDYELLAKLGDPvgqt 363 Thermosinus car...
Q53W22       345 q---rlygeKNRLQALLQRRHESILAHGTRP----VGEEDYTALRDFLMRLDERL 392 Thermus thermophilus HB8
Q2LQW9       356 -----ffqiIDEIKKIQSNRNESILAHGIKP----VTENAVETIFQTVSNFTEFK 401 Syntrophus aciditrophicus SB
Q746E8       400 l----slaeLRGLAGALKGRNSALLVHGFDV----PSPKAVEGIARLAQGLLQDL 446 Thermus thermophilus HB27
Q2FL70       353 -------rwYSDLQQYIMIRNDSILAHGLTPvpgdVAKDMWNEVRNVITEACNGS 400 Methanospirillum hungatei JF-1
O27148       340 ------fgkDNEILDLLRIRNHSILAHGFES----VNGEQYERFYDKVLEYARMI 384 Methanothermobacter thermautotrophicus s...
YP_001039605 360 kkpgkeidsINRLRNKVEARNNSIFAHGYEF----ISKEKYNEFKKVVEDYMNLL 410 Clostridium thermocellum ATCC 27405
YP_001277335 399 ------gwnIGDIRQRSYVRNTSILAHGFRP----ISSLEYEQFADIVEELLDRF 443 Roseiflexus sp. RS-1
YP_001528626 371 -----fydqKDSFLKIQDSRNHSFLAHGFRS----AREAAYMSLRDFIVSLNIFQ 416 Desulfococcus oleovorans Hxd3
YP_001432773 399 ------ewdIGLVRQRSYVRNTSILAHGFRA----ISRHEYEQFADIVENVLDRF 443 Roseiflexus castenholzii DSM 13941
ZP_01665261  364 -----wlkhKGKVLEALQKRNYSFLAHGINP----LTQTDYKYVKDAIWPFISEC 409 Thermosinus carboxydivorans Nor1
| Disclaimer | Privacy statement | Accessibility |
NCBI Home NCBI Search NCBI SiteMap