Conserved Protein Domain Family
Csm6_III-A
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cd09746: Csm6_III-A 
CRISPR/Cas system-associated protein Csm6
CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Protein of this family often fused to HTH domain; loosely associated with CRISPR/Cas systems
Links
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Statistics
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PSSM-Id: 187877
Aligned: 4 rows
Threshold Bit Score: 438.58
Created: 23-Nov-2009
Updated: 2-Oct-2020
Structure
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Aligned Rows:
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Sequence Alignment
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Format: Row Display: Color Bits: Type Selection: 
Q0AW60     27 SYDCEIIelrYEEIdnpQQFDIFYPVFEKELIDIHNAN-PGCEILINLSSGTPQMKSACHLLALTTPFPVIPIQVTTP-- 103 Syntrophomonas wol...
Q5LZX0      7 NYEPELIi--HDPIisdNEVHIFDVMFQRFSDILQEYYtKEDEFILNLSSATPQIKSALFVINRLNGINIKAVKVWSPeh 84  Streptococcus ther...
Q5HK94     67 NTEVEII---IENVdnaQDYDVFKEKFHKYLKIIEDSY-EDCEIILNVTSGTPQMESTLCLEYIVYPENKKCVQVSTPtk 142 Staphylococcus epi...
NP_337396  76 ETDVRIVtytNPSV---HRFDLFVPVFRNHLVELSAEF-PDRTILLNTSSGTPAMQAALVAINVFGIPRTTAVQVSTPar 151 Mycobacterium tube...

Q0AW60    104 ---NESENYGSANyDLETSWKNNLDNDpelGTNNRTQLVESDNLRYLFLREAAISNINAFNYSSALAILASVAefvped- 179 Syntrophomonas wol...
Q5LZX0     85 -asNENIGHDNDE-NIDELIKVNEDNKv--NFIDRTIEDNAEKFSQALLKKTARDFIEKFDYKAALDILDQLSdfpnlks 160 Streptococcus ther...
Q5HK94    143 -dsNAGIEYSNPKdKVEEFEIVNEVEK---KSEKRCKEINILSFREAMIRSQILGLIDNYDYEGALNLVSNQKsf----- 213 Staphylococcus epi...
NP_337396 152 alsKPGDRESPDAyDLELMWDANDDNQp--GAPNRCFEATSAALGALLERANLKQLIVSYDYSAAVTIAADSRlpdqv-- 227 Mycobacterium tube...

Q0AW60    180 ----------vihllMAAQHRKNMdlreakkrSRLANYDLF--PVKSGDA-QELFEYLLLLDLQQNSGQLMDFVRGISPA 246 Syntrophomonas wol...
Q5LZX0    161 lreeirdvvnclskkKIAYIREKLydfsrvfkNQSILSDIL--SFPLDDSqKKALNYYLMIDVLKEREHIADVLIKAKSL 238 Streptococcus ther...
Q5HK94    214 --------------rNGKLLRKKLlsltkqikTHEVFPEIN--EKYRDDAlKKSLFHYLLLNMRYNRLDVAETLIRVKSI 277 Staphylococcus epi...
NP_337396 228 -----------snliRGAMHRSRL--------EHLVAPKFFkdTAFTYDPaNKVAEYISALALLAKREQWAEFARSATPA 288 Mycobacterium tube...

Q0AW60    247 LSRLFECFLREKCQrqvkldycvNKRHEPDHywlkrdklaEKDPSLLCYydLRFPngfrDSDLSCSTLLPMIEFDCRPGG 326 Syntrophomonas wol...
Q5LZX0    239 AEFVIEEIIKKDHEgliv--fdgNLPKLNPSfpdceaildDIDKKMKKSrgIEDTe---ERIFSVQSTLNLLSYLNILEF 313 Streptococcus ther...
Q5HK94    278 AEFILKTYIEIHWPtlii--ekdGKPYLNDE---------DNLSFVYKYnlLLEKr---KQNFDVSRILGLPAFIDILTI 343 Staphylococcus epi...
NP_337396 289 ITIVLRAAVAKHLP---------EDRYLDDMgrvd-rrklEREPEIRCA--LKHP----PKSPNAEWYLYTKDWLALLRQ 352 Mycobacterium tube...

Q0AW60    327 RFPNEkvLLKAQYMRSVEEkIRNPAAHNIVAVKEKqfmq-lvgISSASLVKDMqwmfkitypqyFNTLENVWNSYNRMNE 405 Syntrophomonas wol...
Q5LZX0    314 YEYDSqlQTAINGILSLNG-ERNKVAHGLSEIDTR--------LLSRKKLKQLsenlrlllvdcLGIDSSYFNYYDKQNK 384 Streptococcus ther...
Q5HK94    344 LEPNSqlLKEVNAVNDING-LRNSIAHNLDTLNLDknknykkiMLSVEAIKNMlhi------sfPEIEEEDYNYFEEKNK 416 Staphylococcus epi...
NP_337396 353 FAPDR--VGALEVLGRFESrVRNTAAHEIVSISEDritk-dggLLPEQLLKIL-----------ARETGADLTLYDRLND 418 Mycobacterium tube...

Q0AW60    406 YIISR 410 Syntrophomonas wolfei subsp. wolfei str. Goettingen
Q5LZX0    385 ELTKM 389 Streptococcus thermophilus CNRZ1066
Q5HK94    417 EFKEL 421 Staphylococcus epidermidis RP62A
NP_337396 419 EIIRQ 423 Mycobacterium tuberculosis CDC1551
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