Conserved Protein Domain Family
Csx1_III-U

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cd09732: Csx1_III-U 
CRISPR/Cas system-associated protein Csx1
CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Protein of this family often fused to HTH domain; Some proteins could have an additional fusion with RecB-family nuclease domain; Core domain appears to have a Rossmann-like fold; loosely associated with CRISPR/Cas systems; also known as TM1812 family
Statistics
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PSSM-Id: 187863
Aligned: 24 rows
Threshold Bit Score: 166.676
Created: 23-Nov-2009
Updated: 2-Oct-2020
Structure
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Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Q59068         4 VLISPLGVGdtntdvykrqYKTAEYKFEGdid-------------gieSPFVLSVLIEKLk------vDKVIVVGTAKSm 64  Methanocaldococ...
YP_001178891   9 VLISVIGKGrlkkd-qtvgYEQTEYVFNPdtnkk---------yvaskTAFFGIALYEYFkevekiqiDKFILIGTDRSa 78  Caldicellulosir...
YP_001244688   6 KLVTFLGLGk---------YEESEIKINGnlldgcvkndgsqdifcvrQSIFPLALIEYLnhi--gkqVETIFFLTKTVk 74  Thermotoga petr...
YP_001410888   3 KVIGFLGSAr---------YGPSIALIQGer---------------inQRVFPLALIEYYvkk--gerVEGIFALTEEAe 56  Fervidobacteriu...
ZP_01125566    3 VLVSFLGRTprn----edgYRQTTYRLPDgtr--------------eqAAYLGYCLQRWQr------pDRLVILGTAGSm 58  Nitrococcus mob...
Q1AZD6         3 KLICTLGTGr---------YDEVTYVFGDre---------------krTSMAPVAVGCCAaag---geLELVALLTQRAd 55  Rubrobacter xyl...
A0B6W7        25 VLLTALGLN----------PKETTYTLGNrt---------------ckSLLSPVALYNLLped--erfDRVLALCTEEV- 76  Methanosaeta th...
YP_001039603   4 KLFAFLGIGd---------YKSVEYYFQNkke-------------gykTEYIQEAITKLLne----qdLNVTVFVTAEAr 57  Clostridium the...
YP_001664908   4 KFFSFLGTGa---------YTKCKYKFDNies--------------dsSCYVQEALIDNLlkkg-vnlESVFIFKTEEAt 59  Thermoanaerobac...
YP_845478      4 VYISFLGTNd---------YVECRYLDEFdtp--------------epVRFVQEATIGTIcrgw-gpgDRITIFTTTDAe 59  Syntrophobacter...
Q59068        65 weklyeyyakevgefdeeywieigkkvgmskydnyalseedlkkiekvIDKYLKKINpnavgg----skckiIKYGIDKD 140 Methanocaldococ...
YP_001178891  79 wselyqilphdvqnseditamc----lkvyeeekkgiqdstlsvwqntLTKYVPKLKfyk---------ikpLELGRGID 145 Caldicellulosir...
YP_001244688  75 esktw-------------------------------------decrrfLRSNIKDFE---------------IPGGESSS 102 Thermotoga petr...
YP_001410888  57 kkf------------------------------------------qdeVAPFLAELGnvky-------rtirVSENKTPS 87  Fervidobacteriu...
ZP_01125566   59 wdhlferdvdlagqe-----------------eekrlelgdwvdrqavTQEHLDALTpllaaslgceielriIPEALKEN 121 Nitrococcus mob...
Q1AZD6        56 eth------------------------------------------geeLRAEAEALGwrys--------pvrIPVGRSEE 85  Rubrobacter xyl...
A0B6W7        77 ------------------------------------------------LEKTFPLLReelpvmceptrvhsgVSAGDLQA 108 Methanosaeta th...
YP_001039603  58 kkhwe-------------------------------------pennkgLESRLKKLNinck--------avnIPDGKAND 92  Clostridium the...
YP_001664908  60 ianwskn---------------------------------kkypsdpgLKQVLDKYNgkpsi------nyvdIPSGQNEN 100 Thermoanaerobac...
YP_845478     60 kknwednghyd--------------------------kdnkrykeckgLKRCLEELKltapf------anvhIPDGHSTE 107 Syntrophobacter...
Q59068       141 EIWENFDLfmslinevNDGDEIYLDITHSFRSIPLFMYVMLEFMRYFK-NVKLkGIYYGMLDvire----------lghA 209 Methanocaldococ...
YP_001178891 146 ILLQELDK--------DGDYNIIFDMTHAFRNIPVVFSYGIMLLKYLR-KINSvRIFYGAHDminyfs-----dlvsgqS 211 Caldicellulosir...
YP_001244688 103 NLMNFLVRnlv--enlEKGDRVILDVTHSFRSIPLMASVVALYLKEAK-DVNV-SVVYGKYNket------------kvT 166 Thermotoga petr...
YP_001410888  88 ETIVDLIKgmt--evfEDGDEVIIDITHGFRWMPASALVISMFIKQVRkNVGI-KIVYGNYKkes------------eiT 152 Fervidobacteriu...
ZP_01125566  122 EQVALLQIldq---atEGATHLSIDVTHAYRHLPMIALTAALYLRAARpELAIeGLWYGAYRpet------------atA 186 Nitrococcus mob...
Q1AZD6        86 ELWEIFGRvge---hvEEGDDLVLDLTHGFRHIPALLLLSAVQYYTVRrEADLlGIYYGAYEarme----------ddrR 152 Rubrobacter xyl...
A0B6W7       109 TLHNMLEKi-------PEKAELILDVTHGFRHYPFLFFTACLYLKALK-DVKIkKIWYGRLDaknp----------dgaT 170 Methanosaeta th...
YP_001039603  93 DVWKIFTSvys---eiEFNDEIYVDVTHSLRNIPIIFMSVLNYAKVTK-NCTIkGIFYGAYEake-----------nerA 157 Clostridium the...
YP_001664908 101 ELWEIFDKvle---qiDKGDEIIFDITHSFRSIPMLALIILNYAKFIK-KCEIrGIYYGAIEavgkeik---dieesdiA 173 Thermoanaerobac...
YP_845478    108 EMWDIFQKvfd---slNERDEVVFDITHALRSIPLLAIVVLHYAKVLK-RVSLkGIYYGAFEalgsiadvrarpveerrA 183 Syntrophobacter...
Q59068       210 PVVDLSPIFEISEWIRGMYEFTTYGNSYLISKLLEnedkeiaeklqkisryidanylkelreevktlkpl---------- 279 Methanocaldococ...
YP_001178891 212 PVIEIPLIDKLVRLIESMATFQNSGYFVPLLEQIGfgdrektyfklemnrqprreieeiikefenkq------------- 278 Caldicellulosir...
YP_001244688 167 ECEDLTPLTKATSWIYAVRLFKEYGYAKELADLIKkrneeiyrgs----------------------------------- 211 Thermotoga petr...
YP_001410888 153 ELCDISSLIEIADWIYSTRLFIEYGYGEELSRLIDtareriykns----------------------------------- 197 Fervidobacteriu...
ZP_01125566  187 EVCDLSGLLNITAWIEALQRHDWLGDYGAVAELIKadhatvaenlrqaafcesihqgqrargllkkarn----------- 255 Nitrococcus mob...
Q1AZD6       153 PILDLTPLIDLPEWSYGVRLLRDYQLPGPLGRMLEdlqr----------------------------------------- 191 Rubrobacter xyl...
A0B6W7       171 PFIDLSILLEMIDWFRVVQSFRDMSNPKALADKLLaykrdvikpdtnippstkkkysavssaakefaelfgiglpveigm 250 Methanosaeta th...
YP_001039603 158 PIYDLTLFDQIGEWSSGVEQLLTTGECEMFCSTVEktldpllreakgkdeliklvkkcsklikefytdlklvrgksvled 237 Clostridium the...
YP_001664908 174 PIFDLTPFVRLLDWTVGIDRFIETGDARYINYLMKlgtkelhlkgmkdernilsnfaqklenytrnvatcrgkeiskgg- 252 Thermoanaerobac...
YP_845478    184 PVLDLTDLDKLMDWTMATDRFLQGGDARSAAALAKaeaerelkktrgkdeaakairslgcgledfskmlytcrgreis-- 261 Syntrophobacter...
Q59068       280 --------------------------lnekkdtgrflkyfipelhkfidklkyedsdfefQISMAKWNFDNKKYSSGYLC 333 Methanocaldococ...
YP_001178891 279 -----------------------------eavkhafekeiveimykefcemnrqeklyqrMYKRSKFFYERRQYLKALVL 329 Caldicellulosir...
YP_001244688 212 --------------------------------------------------qsskkpkllgSMSQKLQDLSSSIRLGSIVA 241 Thermotoga petr...
YP_001410888 198 --------------------------------------------------tvkdkprklgALASRLLRVSYSLRIGSIKL 227 Fervidobacteriu...
ZP_01125566  256 ---------------------------nlhehplsgpgalfqplleermkwvdgnylyerQRTQALNALRQDDYLRASLY 308 Nitrococcus mob...
Q1AZD6       192 ---------------------------------------------------------rshQQRREQRFTRLQEVARPLGS 214 Rubrobacter xyl...
A0B6W7       251 asadlqrlieelrvegdlsaikillaedllleienaaerfrlpegvekkdlildigeihrQEKLIDAYFEAGYHNNAIGL 330 Methanosaeta th...
YP_001039603 238 g-------------rklyqvlceikalntekhitmqpffhilervenqvaffqnenlienILECVKLCKKFGQYQQAYTF 304 Clostridium the...
YP_001664908 253 -----------------lelknilgdavsiadktyikpmkpvidrlndrfinfsndenknMIEIVKWCSEHNLIQQGFTI 315 Thermoanaerobac...
YP_845478    262 -----------------kastelkkrakecrnlklpkpfrplfemiekrleafkgdslldGLAAVRWCVDHNLVQQGFTI 324 Syntrophobacter...
Q59068       334 LTDSIFWKLCELYN 347 Methanocaldococcus jannaschii
YP_001178891 330 LYEAIIVLFADVYN 343 Caldicellulosiruptor saccharolyticus DSM 8903
YP_001244688 242 IRKNLTNFFNFIDR 255 Thermotoga petrophila RKU-1
YP_001410888 228 LRESVHEFLKLFDS 241 Fervidobacterium nodosum Rt17-B1
ZP_01125566  309 GFEAFITKLAQERG 322 Nitrococcus mobilis Nb-231
Q1AZD6       215 LEAPLVSGLPLEAG 228 Rubrobacter xylanophilus DSM 9941
A0B6W7       331 IRELIISRLMLEDE 344 Methanosaeta thermophila PT
YP_001039603 305 LRENIINYVCINTG 318 Clostridium thermocellum ATCC 27405
YP_001664908 316 LEEGIVNFFCEKFG 329 Thermoanaerobacter pseudethanolicus ATCC 33223
YP_845478    325 LEEIVFSHTLSGVG 338 Syntrophobacter fumaroxidans MPOB
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