Conserved Protein Domain Family
RAMP_I_III

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cd09726: RAMP_I_III 
CRISPR/Cas system-associated RAMP superfamily protein
CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; RAMP superfamily proteins
Statistics
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PSSM-Id: 187857
Aligned: 109 rows
Threshold Bit Score: 31.9887
Created: 19-Nov-2009
Updated: 2-Oct-2020
Structure
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Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Q7MC47        10 IHSEWHVGSgeeggtyada-------------lvlknphnlPFLPGKALKGLFRdsflvah-----dnrwfggELTTEa- 70  Vibrio vulnific...
YP_001306901  10 FKSPLHVGQvdkve-----------------------tvvsDIIHSDTIFSAIInsynllygk-ektkellkfILENEds 65  Thermosipho mel...
Q9X2C8        12 FRSGFRVGRgnet------------------------dstlPTIHSDTIYGAVVyh---------------afKWSEKae 52  Thermotoga mari...
Q5HK92        12 FKTPVHFGKkrls-------------------------dgeMTITADTLFSALFietlqlgkd--tdwllndlIISDTfp 64  Staphylococcus ...
YP_001040330  22 SVNKFIPSTtiwsallnsmlqlgiidpktdpknlfrvntpsPIINGEAMFWVYGldivlydk---avsllhspKLSDPlr 98  Staphylothermus...
Q4J7N2        10 PSTGYVISGepspdrkve--------------fnasifysyPYINPSTIKGFLRsaavygy------pdvsceILSSKti 69  Sulfolobus acid...
O27151        14 LSSDTIFGAliysfsqlypde--------vdevvdqfmedpPFLISSSFPYIETderlrfypriitepgsydpILFKKyk 85  Methanothermoba...
Q96Z54        12 ALYPIVGGYnqypvs--------------------lkvgyeEPIRSTEIKGLWKwwtri----------liesAIERKrh 61  Sulfolobus toko...
YP_001325269 100 NTTKELEEKpkdv-------------------------kkiKFISLNALKDHNKkelkki-------tigkeyLISDEe- 146 Methanococcus a...
NP_217336     37 CVEALRMGGqqllgelvacst--------lrltdllpyvgpDYLVPKPLHSVRSdg----------------sSMQKKl- 91  Mycobacterium t...
Q7MC47        71 -----------------------------iELLFGHQGqve--------hthGALSFSNAElsseesayfel-------- 105 Vibrio vulnific...
YP_001306901  66 ilissafyyynd----iyfyprplgykfdlDKKFDFKKv-------------KKIKFVSEEyitgkvktpiiinglatdn 128 Thermosipho mel...
Q9X2C8        53 dfakklkvssl-------lfvrgdrllvpkPFLYNTYSleeddeespkelkkASYVFLDKLadyrsik------------ 113 Thermotoga mari...
Q5HK92        65 yenelyylpk--------plikidskeednHKAFKKLKyvpvhh--ynqylnGELSAEDATdlndif------------- 121 Staphylococcus ...
YP_001040330  99 afdrvnnilkntvlastnllkhdlskcsldVEEYGGEAstelk-----lqcnGEVYYFNEFdgvgyvitskee-----sk 168 Staphylothermus...
Q4J7N2        70 isn----------------------idrikKKIHNEEQirl---------sfMCSDIEDLLenr---------------- 102 Sulfolobus acid...
O27151        86 gvsyipeglflewa-sgeadeehivnsmekNRVYGGLLid----------gdKDIRFGEVEf------------------ 136 Methanothermoba...
Q96Z54        62 gvtky------------------ndlnkllEDFFGSTNfks--------pirVRIEIEDNFitifkaiw----------- 104 Sulfolobus toko...
YP_001325269 147 ------------------------------KKEFEYKNp-------------ENMDLFKKI------------------- 164 Methanococcus a...
NP_217336     92 ------------------------------AKKIGFLPaaqlg-----sfldGTADLKELAa------------------ 118 Mycobacterium t...
Q7MC47       106 ypehtrhcyrVHFSTAINGQTgvakqts--lramevaIPLRLYARIELddqrl-------dsrmqQQVNEWLEMCSTLi- 175 Vibrio vulnific...
YP_001306901 129 keierlyfieERPRITVDRITnetnify--vsalrfiENSGLWFFLSLs---------------eEIEREIFAALRLLs- 190 Thermosipho mel...
Q9X2C8       114 ---easgavcKENPVEIVRIPrnsl---------driTSSSNLYFVEVafvkegftpaflaefpdEYEGLFKTAVKSLg- 180 Thermotoga mari...
Q5HK92       122 ----nigyfsLQTKVSLIAQEtdss--------adsePYSVGTFTFEPeaglyf-----iakgseETLDHLNNIMTALq- 183 Staphylococcus ...
YP_001040330 169 kihkkileidKRPKNVIDRITgsatpy----hlpatiYHTPLLLGVEVl----------------NENLSIRDVEASMnl 228 Staphylothermus...
Q4J7N2       103 --------nsREASVYLEVLGdiirklk--rpckvcrVFGNGSVKGKLri-------------iyQIRPLNTTEIKGLk- 158 Sulfolobus acid...
O27151       137 ----------EEPHNVVNRIErrtegvf--hlrrvfyENMGRFFLVKFrd--------------aSFRSRLESALRFLa- 189 Methanothermoba...
Q96Z54       105 ---dfiirilENRKVTVKSENtqnlniadtiiiptinINIGNSTIFKItennh-------virvkRENNPENNTLNIT-- 172 Sulfolobus toko...
YP_001325269 165 ----------IEQKVSIDRIKgtt----------ledDDKGQLYSIEFikplrkkn--kkdnkkdKTDKNNKNIINIVgf 222 Methanococcus a...
NP_217336    119 ----------RQTKIGVHAVSakaaihn---gkkdadPYRVGYFRFELdaglwl-----latgseSELGLLTRLLKGI-- 178 Mycobacterium t...
Q7MC47       176 --------------------------LGLGAKRTRGLG 187 Vibrio vulnificus YJ016
YP_001306901 191 -------------------------dEGLGGDRTHGNG 203 Thermosipho melanesiensis BI429
Q9X2C8       181 -------------------------dSGIGADSTYGYG 193 Thermotoga maritima
Q5HK92       184 -------------------------ySGLGGKRNAGYG 196 Staphylococcus epidermidis RP62A
YP_001040330 229 l-----------------------sdLGIGGERTYGFG 243 Staphylothermus marinus F1
Q4J7N2       159 -------------------------fSREYKENREGLS 171 Sulfolobus acidocaldarius
O27151       190 -------------------------dRGLGPDVSTGKG 202 Methanothermobacter thermautotrophicus str. Delta H
Q96Z54       173 --------------------------LDLNAKKLTATL 184 Sulfolobus tokodaii
YP_001325269 223 yflidfmgingdlakkinasinlikdEGLGGKRSIGAG 260 Methanococcus aeolicus Nankai-3
NP_217336    179 --------------------------SALGGERTSGFG 190 Mycobacterium tuberculosis H37Rv
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