Conserved Protein Domain Family
Cas1_I-C

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cd09721: Cas1_I-C 
CRISPR/Cas system-associated protein Cas1
CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas1 is the most universal CRISPR system protein thought to be involved in spacer integration; Cas1 is metal-dependent deoxyribonuclease, also binds RNA; Shown to possess a unique fold consisting of a N-terminal beta-strand domain and a C-terminal alpha-helical domain
Statistics
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PSSM-Id: 187852
Aligned: 22 rows
Threshold Bit Score: 495.99
Created: 7-Feb-2010
Updated: 2-Oct-2020
Structure
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Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
NP_900899   4 QLNTVYVTTEGAWLRKDGENLVMEVEGSERARLPVHMLEGLVCFGRVLVSPPLMGFCAERGIVISYLSPNGRFLARVEGP 83  Chromobacterium vi...
YP_544717   4 LLNTLYVTRQETYVHKERDTIVINSAGEKLAQFPALTISNILCFGQVSVSPPMMGYCGENGIGLVFYTEYGRFLARMIGK 83  Methylobacillus fl...
YP_434021   4 LQNSLYVTRQESYLHKERETIVIKQGKDKLAQFPAHAVANIFCFGQISVSPFLMGYCGEQGIGLVFFTEYGKFLARIQGR 83  Hahella chejuensis...
YP_088173   4 LQNTLYITTQGSYLHKERETLVVEQDRKKVAQLPVHSIGHIFCFGNVLVSPFLMGFCGENNVNLAFFTETGRYLGRLQGR 83  Mannheimia succini...
YP_429366   4 LLNTLYLMTPRTLVRLDHETVKIEVEGELKMQIPLHHLGSIVCFGDVTLTTPLIMRCAEDKRLIVFHDQHGRFKARVEGP 83  Moorella thermoace...
YP_384037   4 ILNTLYVMTQGAYVCLDHETVKVEVKGALQMQVPLHHLGAIVTMGNVMMSPFIMARCAEDGRALVILDRNGKFKCRVVGK 83  Geobacter metallir...
YP_158873   3 LLNTLYVTTPESYLHLDNDTLRVEVERETRLRVPLHHLGGVVCMGNVMLSTPLMHRLAGDGIGLVLLDGNGRFKARLEGP 82  Azoarcus sp. EbN1
YP_525137   3 LLNTLYVTTADTYLRLDNDTLRVEVEQETRLRVPLHHLSAVVCFGHTGLSAPLMHRLAEGGIALVLLDDNGRFKARLEGA 82  Rhodoferax ferrire...
YP_113164   4 LQNTLYVTTPEAYLRLEGETVCVMIEEQKRLQVPLHHLSAFVLFDHVMLSPALLGRCAEDGRSVVWLDRAGRFRARLEGP 83  Methylococcus caps...
YP_635128   4 ALNTLFITAEGTRLNKEGECVVVTVQDQKKAEVPLRHLRSVVCLTRAWLTPELMESCLEAGIHVSFFGMTGRFLARVEGV 83  Myxococcus xanthus...
NP_900899  84 VSGNVLLRRAQYRASDDgPasaSLARHLLLGKLHNQRAVLSRALRDHgeglknearseLEQARKRLSRLADKLWHvddLD 163 Chromobacterium vi...
YP_544717  84 QTGNVLLRRTQYRLADDpEkanAIARVMVGAKIANARTVLMREIRNHgeh------anISRAVEQLGYSLKSCQFsqsVP 157 Methylobacillus fl...
YP_434021  84 QSGNVLLRREQYRVSDKdTprlDIARSIVLAKIANSRRVLQREVRNKgah------psLDEAIARLANCLRRCERpdnLD 157 Hahella chejuensis...
YP_088173  84 QSGNVLLRRAQYRISEQnPi--PIARNIIAAKIQSAKRVLQRRLRNHgeh------eeVQAAVMALNFSLQQLKQaenLD 155 Mannheimia succini...
YP_429366  84 VSGNVFLRHAQHEALSDsKkttAIARNIVAGKIRNTRQVVLRGAREAdned---drkaLQETARELAHGLDALSRspdLE 160 Moorella thermoace...
YP_384037  84 TSGNVLLRQTQYEAVRDrErsaAIARNMVAGKVKNARQILMRGARETtdad---esavLRKAGDTLADALFHLKDatdID 160 Geobacter metallir...
YP_158873  83 VSGNVLLRRAQHIQSADtDfalQFARSCIAGKIRNARQMLLRGARDArnee---esarITRAAEDLAAALRSVPGsgdAD 159 Azoarcus sp. EbN1
YP_525137  83 VTGNVLLRQAQFGRVADpAftlDMARACVAGKIKNTRQVLQRGAREAksed---eaqvLTRLADDLAASLRALTEatsLD 159 Rhodoferax ferrire...
YP_113164  84 VNGNILLRQAQFRAAEDgAqtlGLARAVLAGKLRNSRQLLMRGARETddvv---erdaLVRAAKLIANQVRKLPLaqdLD 160 Methylococcus caps...
YP_635128  84 PGGNVLLRRQQYRAADDiArsvAISRALVVGKLGNARQFVLHARRDAaper----qeaLSETARRLSEHLRALTRvedLV 159 Myxococcus xanthus...
NP_900899 164 ALRGVEGEAAQNYFAVFPHLLrMDdp-aLRFAGRSRRPPRDPVNAVLSFLYTLLTHDCRSALESVGLDPTVGFLHRDRPG 242 Chromobacterium vi...
YP_544717 158 QTMGIEGDAAATYFSVFNGLIrGSr---FQFNGRIRRPATDPVNALLSFIYSLITQECVSALMGVGLDPYVGFLHQDRPG 234 Methylobacillus fl...
YP_434021 158 ILRGLEGEAAAIYFGVFNQLLkQDg---FDFKGRVRRPPTDPVNALLSFLYTLVAQEISSALQGVGLDPYVGYLHVDRPG 234 Hahella chejuensis...
YP_088173 156 LIRGIEGDAAARYFGVFQHLL-AEkn-gFGFDGRNRRPPRDGVNALLSFLYSILGKDISGALQGVGLDPQVGFLHADRPG 233 Mannheimia succini...
YP_429366 161 QIRGIEGNAARHYFATLDRMVrVNre-aFKITHRNRRPPLDRMNALLSYIYALLLNDCLSAAEGVGLDPQIGYLHVLRSG 239 Moorella thermoace...
YP_384037 161 HVRGLEGEAANAYFQVFDRMVkEEerpaFRMNGRNRRPPLDPMNALLSFLYTLLLNDCISAVEGVGLDSQMGFLHVLRPG 240 Geobacter metallir...
YP_158873 160 ILRGVEGEAARQYFAALNLLVrEDarpvFQMDGRSRRPPRDRMNALLSFLYSMLMNDCRSAVEAAGLDPQVGFLHVLRPG 239 Azoarcus sp. EbN1
YP_525137 160 VLRGIEGEAARQYFIGLNLLVrPEsravFQMDGRTRRPPRDRFNAMLSFLYSMWMNDCRSALEAAGLDPQVGFLHALRPG 239 Rhodoferax ferrire...
YP_113164 161 TLRGLEGDVARLYFEALPKVMrAKaraeFPFDCRNRRPPRDRFNALLSFLYALVLSDCRAALETVGLDPQLGFLHAVRPG 240 Methylococcus caps...
YP_635128 160 QVRGLEGIAARDYFESFPALLkKSaq-gFEFDGRNRRPPRNPLNAMLSFGYALLAQDCAGALTGVGLDPAVGFLHEDRPG 238 Myxococcus xanthus...
NP_900899 243 RPSLALDLVEEFRPvLADRLALSLFNRRQLAAKDFRGQDNGGVLLSDEARKTVLVAYQERKRDSLLHAYLDEKVELGLFP 322 Chromobacterium vi...
YP_544717 235 RPSLALDLLEEFRAsWADRFVLTLLNRRQLSPQAFVTEASGAVRLTDDTRKQVLVAFQERKQEEVVHPYLQEKVPYGLLP 314 Methylobacillus fl...
YP_434021 235 RVGLALDILEEFRAwWCDRLVLTLINRKEVKASDFDIEASGAVRLKEDARRKVLVAYQEKKQEEISHPFLNEKVQVGLLP 314 Hahella chejuensis...
YP_088173 234 RDSLAQDLLEEFRAwWVDRMVLSLINRGQIKPQDFVTEDGGAVNMKPEARKLLFQSLQAKKQEKIVHPFLQEEVEIGLLP 313 Mannheimia succini...
YP_429366 240 RPALALDLMEEFRAiLADRLALTLVNRRQIDERDFVERPGGAVHINDNARKEIAIAYQKRKQEEVLHPVLNRKVPLGLVP 319 Moorella thermoace...
YP_384037 241 RPSLGLDIMEEFRAvLADRLALTLINRKQITEKHFEVRPGGATYLDDAGRKEVIMAYQKRKQDEFHHPVLDQKVPFGLLP 320 Geobacter metallir...
YP_158873 240 RAALALDLMEEFRP-FADRLALTLINRGQIAGDDFVERAGGAVLLEGDARKAVVVAWQERKQEELTHPLLAQAIPLGVVP 318 Azoarcus sp. EbN1
YP_525137 240 RAALALDLMEEFRP-WADRLALTLINRGQLTADDFVLREGGGVLLEPDARKAVVVAYQERKRDEINHPLLAQSVPLGLVP 318 Rhodoferax ferrire...
YP_113164 241 RPALALDLLEEFRApLADRLALTLVNRGQLQASDFDEREGGAVLLNDKGRKTVIAAYQTRKQEAITHPLLKQTLPIGLLP 320 Methylococcus caps...
YP_635128 239 RLSLALDLMEEFRApVVDRLVFSLVNRGQLKPGDFRTESAGAVLLKDDARKTFLVAYQEAKQVGVRHAFLGQETTWGMAP 318 Myxococcus xanthus...
NP_900899 323 AIQAQLLARHLRGDLDAYPPFL 344 Chromobacterium violaceum ATCC 12472
YP_544717 315 HCQALLLARHLRGDMEFYTPYL 336 Methylobacillus flagellatus KT
YP_434021 315 HCQALLLARHLRGDLQHYPPFS 336 Hahella chejuensis KCTC 2396
YP_088173 314 YIQAMLLARHLRGDLAEYPPFL 335 Mannheimia succiniciproducens MBEL55E
YP_429366 320 HIQARLLARVLRGDAEEYLPFM 341 Moorella thermoacetica ATCC 39073
YP_384037 321 HVQARLLARHLRGDLEQYTPVL 342 Geobacter metallireducens GS-15
YP_158873 319 LVQARLMARTVRGEMDTYLPFL 340 Azoarcus sp. EbN1
YP_525137 319 LVQARLMARALRDDGAPYVPFV 340 Rhodoferax ferrireducens T118
YP_113164 321 HWQARLLARYLRQDVAHYVPYL 342 Methylococcus capsulatus str. Bath
YP_635128 319 HLQALLLARHLRGELDGYPPFA 340 Myxococcus xanthus DK 1622
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