Conserved Protein Domain Family
Cas1_II

?
cd09720: Cas1_II 
CRISPR/Cas system-associated protein Cas1
CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas1 is the most universal CRISPR system protein thought to be involved in spacer intergration. Cas1 is metal-dependent deoxyribonuclease, also binds RNA; Shown to possess a unique fold consisting of a N-terminal beta-strand domain and a C-terminal alpha-helical domain.
Statistics
?
PSSM-Id: 187851
Aligned: 17 rows
Threshold Bit Score: 319.968
Created: 7-Feb-2010
Updated: 2-Oct-2020
Structure
?
Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
?
Format: Row Display: Color Bits: Type Selection:
NP_970942      3 WRTVVISNRA-KLDLHLNHLVVRgek---tqkVFIEEISVLIIETtAVSITAALLNELIKQKVKVIFCDEKRNPASELIG 78  Treponema denti...
NP_687909      4 WRTVVVNTHS-KLSYKNNHLIFKdsyq--temIHLSEIDILIMETtDIVLSTMLIKRLVDENILVIFCDDKRLPTAMLMP 80  Streptococcus a...
ZP_00234714    3 WRTVVVNSHS-KLSYKNQHLVFKsayq--qemIHLSEIDVLILETtDITLTTMLINCLVAENILILFCDDKRLPIGKVLP 79  Listeria monocy...
YP_002000095   3 KRVIEISESN-YTYLFLNNLVVNkdgt--kitIPTSQIDTVLFENdKLTITLPLINDLVDHGINIIVCGRNHMPKAQIIP 79  Mycoplasma arth...
YP_003248237   3 KRTLYFGNQA-YLSLKDNQLVIKkrnd-eivtAAIEDIAYIVLDSpQITVTNALLGALLENNCAIINCDKTHLPSGLLLP 80  Fibrobacter suc...
NP_853457     22 KKVLEVSETE-FISLHLDTLIVRkhga--rvtLPLKTLDTILITNpYCNISVPLLNKIVENNINLIVCNTKFQPTMQILP 98  Mycoplasma gall...
YP_190006      2 KDVIYVENHY-FVTAKENSIKFRnvidksekfYLFEEIEAIIFDHyKSYFSHKLVIKCIENDIAIIFCDKKHSPVTQLIS 80  Staphylococcus ...
YP_535002      3 FRNVIITQHS-KLSYSNNAMIVQnkdg--inqIPLVDMDILLISTtQAVITSALVSKLAESGIKVIFTDNKNEPVTETVN 79  Lactobacillus s...
YP_278701      4 KKVVEIKETE-YLFFHLNSLIVKkenn--kivLPLSDIDTILISNpYCTISVPLINAIVSNNINLIICNKDFEPNVQLLS 80  Mycoplasma syno...
NP_938446      5 WRVVDLIDFDgKVSYQRGQLAITsdsgelratLPLAQIAVVLIGN-KLIISGAVLVKLSEYDIAVLVCDWRRVPVAGSFS 83  Corynebacterium...
NP_970942     79 YygshdtSEKIRLQIKWDKNIKQLVWTEVVTEKIRQQKYLLeklnl---pqaslLAEYITDIDINDKTNKEAHAAKAYFA 155 Treponema denti...
NP_687909     81 YyarhdsSLQLSRQMSWIEDVKADVWTSIIAQKILNQSFYLgecsff--eksqsIMNLYHDLEPFDPSNREGHAARIYFN 158 Streptococcus a...
ZP_00234714   80 FygrhdsSLQLTKQLEWEAELKAAVWTEIISQKILNQSTYLsmlnyd--ekassLINLHETLAVFDPTNREGHAARIYFN 157 Listeria monocy...
YP_002000095  80 Fqgy-ynAKILQKQIKWDNDFKERVWRRIIKLKIRQTMVMLehlailrdddkvkLEDYANSVKAFDITNCEGHCAKLNFK 158 Mycoplasma arth...
YP_003248237  81 LsgntlqSERFQAQIDASLPLKKQLWQQTVQQKILNQAAVLhgshd---aeignMTAWANSVRSGDVDNREAVAAAYYWK 157 Fibrobacter suc...
NP_853457     99 Issy-ysNKNYLWQIRWTDEQKNQIWKQLVKLKIINYARLInhlnittddniekLTNYYTNVVDGDLNNCEGHAAKLSFK 177 Mycoplasma gall...
YP_190006     81 SygmvnrLKRIQSQFQLSGRTKDRIWKKIVINKIFNQTRCLennlhn--envklMLGFAKEVSSGDKSNKEAHATRIYFK 158 Staphylococcus ...
YP_535002     80 YypnnrsLDTYLQQYEWNDHVKEILWTKIVRSKIINQIKVLknyqi----dcqdLKIELDKLEINDMTNREAVVARKYFE 155 Lactobacillus s...
YP_278701     81 Isgy-ysNKNFLSQINWTQEFKDKTWEKIIKLKTTNYVNLIyffgllnkedvekFNFYYKKIIPGDKNSMEGHIAKLTFK 159 Mycoplasma syno...
NP_938446     84 WnehtriAARQRAQASLSLPRQKSAWAQIIKAKILGQARTAaqlgf----datdLKNLARAVRSGDVDNREAMAAKRYWE 159 Corynebacterium...
NP_970942    156 ALFGa--gFSRsld---ipiNAALNYGYSILLSAFNREIIANGYITQLGIFHDNMFNPFNLGSDLMEPFRPLVDAEVFkl 230 Treponema denti...
NP_687909    159 TLFGn--dFSReqd---npiNAGLDYGYSLLLSMFAREVVKCGCMTQFGLKHANQFNQFNLASDIMEPFRPIVDRIIYen 233 Streptococcus a...
ZP_00234714  158 QLFGn--dFTReqe---ndiNSGLNYGYTLLLSVFARELVKSGCMTQFGLKHANQFNDFNLASDLMEPFRPLVDQIVYek 232 Listeria monocy...
YP_002000095 159 ILFGe--kFVRktntmedtyNAYLNYGYSVLLSYVARAICSKGYDNRLGIFHRSYSNFYPLACDLMEPFRCIVESLVYkh 236 Mycoplasma arth...
YP_003248237 158 EMFPdipdFVRdrng--vppNNMLNYGYAILRGVVARALVSSGLLPTLGIHHHNRYNAYCLADDIMEPYRPIVDKLILev 235 Fibrobacter suc...
NP_853457    178 LLYGe--dFSRsqkd--diiNKYLNYGYIVLMTYVSRTLVKNGLDNRIGIFHKSFNNHFALSCDIMEPFRPIIDYLTFsy 253 Mycoplasma gall...
YP_190006    159 DLFGk--qFKRgryn--dviNSGLNYGYSILRSFINKELAIHGFEMSLGIKHQSKENPFNLADDIIEVFRPFVDNIVYei 234 Staphylococcus ...
YP_535002    156 KLFGn--kYSRkdf---tpmNAALNYGYSILLSAVNKEIVSAGYVTYLGIHHQSQENMFNFGSDLMESFRPVVDYWLAdk 230 Lactobacillus s...
YP_278701    160 NLYGs--tFNRtdke--neiNKFLNYGYTILMTYVSRNLVKKGYDNRIGVFHKSFNNHFALATDLMEPFRFLIDKLVYel 235 Mycoplasma syno...
NP_938446    160 IISAed-dFRRlpglaatgwNGALDYAYTVLRGHGMRAICSAGLVGTLGVFHHGRGNQFALVDDLIEPFRPAIDYAVFsi 238 Corynebacterium...
NP_970942    231 npq------kfeheEKLKIVSVInkkvlinnkehyLNKAIEIFVHSI 271 Treponema denticola ATCC 35405
NP_687909    234 rqs-------dfvkMKRELFSMFsetysyngkemyLSNIVSDYTKKV 273 Streptococcus agalactiae 2603V/R
ZP_00234714  233 rne-------dfqvIKRSLFELFtkqfdyndqhmfLTNIASDYTKKI 272 Listeria monocytogenes str. 1/2a F6854
YP_002000095 237 vrisr--gepnfqeFKEELFTIFykhfncqgenlmLIDCIDKLVVLV 281 Mycoplasma arthritidis 158L3-1
YP_003248237 236 ineieeyptdlsteIKAKLLRIPvldcvidgnrspLMNAVSTTTASL 282 Fibrobacter succinogenes subsp. succinogenes S85
NP_853457    254 liknq---nddfksYKKDLFISFenfif--pngknLNQVIDMLIKAI 295 Mycoplasma gallisepticum R
YP_190006    235 vfkkn--idtfdinEKKLLLNVLyerciidkkvvrLLDSVKIVIQSL 279 Staphylococcus epidermidis RP62A
YP_535002    231 nfl------eftpdIKYGLVDLLnleikynkkqmlLKNAITKYVRDV 271 Lactobacillus salivarius UCC118
YP_278701    236 liiek---nydfinFKKKVFLIFeekillnkspisVNEYICKLIENF 279 Mycoplasma synoviae 53
NP_938446    239 vsns----qeldkeTKRQLVAAVeepfn--sagqsIPTVFTAFAQQY 279 Corynebacterium diphtheriae NCTC 13129
| Disclaimer | Privacy statement | Accessibility |
NCBI Home NCBI Search NCBI SiteMap