Conserved Protein Domain Family
Cas1_I-E

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cd09719: Cas1_I-E 
CRISPR/Cas system-associated protein Cas1
CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas1 is the most universal CRISPR system protein thought to be involved in spacer integration; Cas1 is metal-dependent deoxyribonuclease, also binds RNA; Shown to possess a unique fold consisting of a N-terminal beta-strand domain and a C-terminal alpha-helical domain
Statistics
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PSSM-Id: 187850
Aligned: 16 rows
Threshold Bit Score: 334.628
Created: 7-Feb-2010
Updated: 2-Oct-2020
Structure
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Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
YP_113413  18 HADRHGLLWLTFGNLTVEDGTLHFraapsewmdagdyaIPYQGLSMILLAPGTTVSHDALRLLARHGTLLAAVGDGGVKF 97  Methylococcus caps...
NP_289304  11 LKDRTSMIFLQYGQIDVLDGAFVLidktg-----irthIPVGSVACIMLEPGTRVSHAAVHLAATVGTLLVWVGEAGVRV 85  Escherichia coli O...
YP_425261  14 IKDRSSIVFLQRGQLDVVDGAFVLidqeg-----vrvqIPVGGLACLMLEPGTRITHAAIVLCARVGCLVIWVGERGTRL 88  Rhodospirillum rub...
YP_502834  13 IKERSSVVFLGRGELDVIDGAFVLvdtng-----irmqIPVGGLASLMLEPGSRVSHAAVSLASKVGCLLVFVGEGGVRL 87  Methanospirillum h...
NP_662853  27 VKEKYPFLYLEKGRIEIDDSSIKWidcdc-----nvvrLPVAMLNCILLGPGTTVTHEAVKVMAAANCGICWVGDDSLMF 101 Chlorobium tepidum...
YP_618908  18 TEDRITFLYIEHAKLYRKDGAVEVrdee------givyVPAAIISVLLLGPGVDVTHRAMELMGDSGMAVVWVGEQGVRQ 91  Lactobacillus delb...
YP_710745  13 IEDRVSSLYVEKCHIDRDDNAVVLinre------rtvrVPAAFVATLLIGPGTRVTHAAVRLLADSGTAVCWVGDRGVRM 86  Frankia alni ACN14a
NP_828713  31 IADSLSFLYLDIVRIHQDDTGVCAevtserr-gtekvyVPTAALGCVLLGPGTSITARALATFARHGTTVLITGAGGVRC 109 Streptomyces averm...
YP_250423  18 VQDRISFLYAERCVVNRDNNAVTFader------githVPAASIAALLLGPGTKVTYAAMALLGDSGVSVVWVGEKGVRY 91  Corynebacterium je...
YP_516032  17 HKNRIPYLFLEKGILRVDGHCLLLcqae------saieIPGSMVSCLMIEPGVSVTHEAMKLCGENGTLLMWVGEGGTRF 90  Rhodoferax ferrire...
YP_113413  98 YTAPPMgQGRSDVARAHARLWADEKARLDVARHMYAFRFGRIl--PHKDIAVLRGIEGARVKETYQLLANQHGVEWKGRr 175 Methylococcus caps...
NP_289304  86 YSSGQPgGARADKLLYQAKLALTEDLRLKVVRKMYELRFREPp-pARRSVDQLRGIEGSRVRQTYALLAKQYGVKWNGRk 164 Escherichia coli O...
YP_425261  89 YAAGQPgGARADRLLFQARNALDETARLNVVREMYRRRFDDDp-pARRSVDQLRGMEGVRVREIYRLLAKKYAVDWNARr 167 Rhodospirillum rub...
YP_502834  88 YSVGHPgGARSDRLLYQARLALDEVLRLKVVKKMFSLRFGEDf-sDAYSVEQLRGLEGVRVREGYRKIARDTGVIWNGRr 166 Methanospirillum h...
NP_662853 102 YASGQTpTSNTRNMTHQMKLAANPAKALEVARRLFAYRFPDAn-lENKTLPQMMGMEGLRVRKLYEEMAVKYKVGWKGRr 180 Chlorobium tepidum...
YP_618908  92 YAHGRAlNRSSRLLEAQAKLVSNVRSRVAVARKMYQLRFPDEd-vTKLTMEEMRGKEGTRVRRVYREQAKKTGVKWSKRe 170 Lactobacillus delb...
YP_710745  87 YAGGLGpSRGSGLLMRQAYLVTRTQHRLAVARRMYGMRFPDDd-vSTATMQQLRGREGARIKKVYRAHAERTGVSWNRRv 165 Frankia alni ACN14a
NP_828713 110 YAAALPdSLTTTWLERQTRAWADDTRRLAVATAMYEKRFGEAtvpPGTTLAQLRGFEGQHVKAHYRVLAQQYKIGRFRRa 189 Streptomyces averm...
YP_250423  92 YASGRSlSNSSAAAEAQASIVSNQRRRLFCARQMYAMRFPGEd-iSRATMAQLRGREGSRMKKVYLAEAERTGVPWKKRm 170 Corynebacterium je...
YP_516032  91 YAAAHA-HQDASRVLRQAAIHTNQRERIAAASRLYGLMFDDHm-pPSFTIEKLRGLEGSRVKEIYVNLADKLGMVWQGR- 167 Rhodoferax ferrire...
YP_113413 176 ydr-nnpNAADIPNQAINHAATFVEAAADVAVAAVGGLPPLGFIHEESSNAFTLDIADLFRAEVTLPLAFSVAKrvmd-- 252 Methylococcus caps...
NP_289304 165 ydp-kdwEKGDVVNRCISAATSCLYGISEAAVLAAGYAPAIGFIHSGKPLSFVYDIADIIKFDSVVPKAFEIAArq---- 239 Escherichia coli O...
YP_425261 168 ydh-ndwDGADIPNRCLSAATACLYGLCEAAILAAGYAPAIGFLHRGKPQSFVYDVADLYKVETVVPTAFSIAAkiaagk 246 Rhodospirillum rub...
YP_502834 167 ydp-hswGSADLPNRCLSAATASLYGICEAAVLAAGYSPSIGFLHTGKPLSFVYDIADLFKFETVVPAAFKTAAln---- 241 Methanospirillum h...
NP_662853 181 fep-gkfEMSDTTNKILTASNAALYSIILSAVHSMGYSPHIGFIHSGSPLPFIYDLADLYKQQVSIDLAFSLTAdma--- 256 Chlorobium tepidum...
YP_618908 171 ykv-ddfESETPINKALTAAHQALYGLSYSVIVALGASPGLGFIHTGHDLAFVYDFADLYKADISIPIAFETVAkyg--- 246 Lactobacillus delb...
YP_710745 166 ythgdpfADGDDINRLLSAGHSCLYGICHAAIIGIGASPALGFVHTGSAISFVLDIADLYKAEYTIPLAFDLAAag---- 241 Frankia alni ACN14a
NP_828713 190 ydp-aswDTQDPVNLALSAANTCLYGIVHAAILALGCSAALGFVHNGNQQAFVYDIADLYKADLTIPLAFSLHAs----- 263 Streptomyces averm...
YP_250423 171 ydp-qnfSSGDPINRTLTAANAALYGVAHAVIASLGFIPSLGVIHQGTERAFVYDIADLYKAEISIPAAFDAVAen---- 245 Corynebacterium je...
YP_516032 168 -------EEKSALNTSIGFATSCLYALCEVAILAAGYHPGIGVVHSGNPRSLVFDLADTVKFKTVVPLAFEIAAts---- 236 Rhodoferax ferrire...
YP_113413 253 dpslPLERALRKEAARQFHKQKVIPKMIDRIKELL 287 Methylococcus capsulatus str. Bath
NP_289304 240 --paEPDKEVRLACRDIFRSTKLTGKLIPLIEKVL 272 Escherichia coli O157:H7 EDL933
YP_425261 247 gddsPPERQVRIACRDQFRKSGLLEKIIPDIEEIL 281 Rhodospirillum rubrum ATCC 11170
YP_502834 242 --prEPEREVRYACRDLFRETQLLKRIIPTIEEVL 274 Methanospirillum hungatei JF-1
NP_662853 257 --gyYDRHKIASEFRKRVIEIDLLGKIGPDIETIL 289 Chlorobium tepidum TLS
YP_618908 247 --ddDIASRIRHAMRDKFRETKLIKQMVVDLKHLL 279 Lactobacillus delbrueckii subsp. bulgaricus ATCC 11842
YP_710745 242 ---tVEERDIRTAFRDKVADGHLMGRIVRDLKDLL 273 Frankia alni ACN14a
NP_828713 264 ---tNPEAEARRSFRDGLRLFKLLPRIVGDIQELL 295 Streptomyces avermitilis MA-4680
YP_250423 246 --elTADVNIRRVIRDYVVKKNLIPTMIRDLMFLM 278 Corynebacterium jeikeium K411
YP_516032 237 --psNLNMAVRHGCRDLFSRESMFETLLGHLENIF 269 Rhodoferax ferrireducens T118
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