Conserved Protein Domain Family
Cas1_I-F

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cd09718: Cas1_I-F 
CRISPR/Cas system-associated protein Cas1
CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas1 is the most universal CRISPR system protein thought to be involved in spacer integration; Cas1 is metal-dependent deoxyribonuclease, also binds RNA; Shown to possess a unique fold consisting of a N-terminal beta-strand domain and a C-terminal alpha-helical domain
Statistics
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PSSM-Id: 187849
Aligned: 7 rows
Threshold Bit Score: 497.764
Created: 7-Feb-2010
Updated: 2-Oct-2020
Structure
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Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
YP_001873021  13 ILHSKRSNIYYLEYCRVLVNGGRVEYVTDEGKQ-SLYWNIPIANTTVIMLGTGTSVTQAAMREFARAGVLVGFCGGGGTP 91  Yersinia pseudo...
YP_539907     14 ILHSKRANIYYLEKCRVQVNGGRVEYVTSEGKE-SYYWNIPIANTTALILGMGTSVTQAAMREFAHAGVMVGFCGTDGTP 92  Escherichia col...
YP_162415     12 ILHSKRANIYYLEHCRVLVNGGRVEYITDRGNK-SLYWNIPIANTTTILLGTGTSITQAAMRELGKAGVLVGFCGGGGTP 90  Zymomonas mobil...
NP_245248     15 IMHSKRANIYYLEHCRVLLNGGRVEYVTDEGRE-SLYWNIPIANTSCLLLGSGTSITQAAMRELSKAGVMVGFCSGGGTP 93  Pasteurella mul...
YP_128162     10 ILHSKRANIYYLEKCRIMQKDGRVLYLTEAKNE-NQYWNIPIANTTCLLLGTGTSITQAAMRMLAQAGVLVGFCGGGGTP 88  Legionella pneu...
YP_344730      3 ILPSHRQGLYYLEHCRVMAKDERVVYACQEGAF-TKFFAIPPANTNVILLGSGTSLTQAAARLLASEQVMVAFVGGGGSP 81  Nitrosococcus o...
YP_047074     12 VMLSKRACVFYLEKVRVVLKDDRIVYLTDNSQPvEYFYNIPEKNTAFLLLGKGSSLTDAAARRLAESNVMVGFCGSGGSP 91  Acinetobacter s...
YP_001873021  92 LFaandvevnvswLTAQSEYRPTEYLHDWVSFWFDDEKRLAAAVAFQRIRIAQIQQHWLSSHiqreslfpvnHDQLlfil 171 Yersinia pseudo...
YP_539907     93 LYsanevdvdvswLSPQSEYRPTEYLQQWVSFWFVEDKRLAAAKRFQLIRLTHIDKHWSSSKmlrehafqpdVNALhtll 172 Escherichia col...
YP_162415     91 LFsaneqetdvlwFSPQSEYRPTEYVQAWVKFWFDDEKRLRAAKALQLARSSRIKEQWLKPSlgkdg-flpdERRLsall 169 Zymomonas mobil...
NP_245248     94 LFngteaeigcefFSPQSEYRPVMYLQQWCKFWFDDEKRLAVAKALQQQRLALLEPIWSKLEwv------ysCEKLtalv 167 Pasteurella mul...
YP_128162     89 LLmane----vewLTPQSEYRPTEYMQGWMKFWFDEQKRLYAAKQFQLSRIEYLRVHWKKSRdlaa--egfnSDDLqpel 162 Legionella pneu...
YP_344730     82 LF-----------LASQNEYRPTEYCQAWMRLWQDNDQRLKVAKTFQRNRAEFLMQQWPKLAepk-----phKASLekla 145 Nitrosococcus o...
YP_047074     92 LFssld----ltfLAPQSEYRPTEYMQIWMKAWLDDDARLLMAKILLLERIVLVSQSWKKNLdliqhgiyidENAL---- 163 Acinetobacter s...
YP_001873021 172 SRFEQNLANCLTSNDLMVQEAVLTKALYKLAANtvNYG-DFTRTKRGg----gIDLANRFLDHGNYLAYGLAATATWVIG 246 Yersinia pseudo...
YP_539907    173 NRTCEEIDAAENHTQLMLVEAKLTKALYKMVSQtvGYG-DFTRAKRGg----gIDMANRFLDQGNYLAYGLAAVAAWVTG 247 Escherichia col...
YP_162415    170 HQSEHAIERASDIATLLIEEARLTKALFKLASEtvGYS-DFTRSKRGt----gIDPANRFLDHGNYLAYGLGATATWVLG 244 Zymomonas mobil...
NP_245248    168 TQYQHEFAQAAHSQALLAAEGRLTTKLYALANQatMNEpDFKRSERGk----sIDLVNQFLDHGNYLAYGLGATACWVLG 243 Pasteurella mul...
YP_128162    163 LSSELKIKKAKEVVKLMQNEAELTKQLYRYAANrtQYG-KFIREREA------IDKANIFLNHGNYLAYGLAATTLWVLG 235 Legionella pneu...
YP_344730    146 ERYLADIELAGDNGTILAQEAKFAKKLYKFWANctETE-NFTRDPGKrd---fNDPFNSYLDHGNYLVYGIAAAVLWVLG 221 Nitrosococcus o...
YP_047074    164 NTFKQDIDRSENQQELLAAEGRWAKALYKELAK--GFNiDFKRDEGKnshdslTDIANNYLDHGNYIAYGYAAVALNGMG 241 Acinetobacter s...
YP_001873021 247 LPHGLSVLHGKTRRGGLVFDVADLIKDALVLPQAFIAAMQGEEEQEFRQRCISGFQRTEALDVMIDGIKETAA 319 Yersinia pseudotubercu...
YP_539907    248 IPHGLAVMHGKTRRGGLVFDLADLIKDALVMPQAFIAAMAGEDAQEFRQRCVNIFQQADALDVMITSLQETAQ 320 Escherichia coli UTI89
YP_162415    245 IPHGLAILHGKTRRGGLVFDVADLVKDATILPQAFLSAMAGDEESSFRQKSIAALTHSESLDFMIDTIKKIAL 317 Zymomonas mobilis subs...
NP_245248    244 LPHGLAVLHGKTRRGGLVFDAADIIKDSMILPQAFISAQNGDSEKEFRQACIQNLLRFGALDIIIERLQQLAL 316 Pasteurella multocida ...
YP_128162    236 IPHGFAVMHGKTRRGALVFDVADLIKDALILPWAFICAKENSSEQEFRQQCLQAFIDHKALDYMFEQVKAMAL 308 Legionella pneumophila...
YP_344730    222 IPHSLPVIHGTTRRGALVFDVADIIKDTCVMPIAFQHAAAGRSDQEMRQACIAWLDESHAMTFLFQSIKRVAQ 294 Nitrosococcus oceani A...
YP_047074    242 ISFALPILHGKTRRGGLVFDLADLVKDAFVMPTAFICASKGLNQKEFRMQLIEICQDQDLLDYMFSFITDICS 314 Acinetobacter sp. ADP1
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