Conserved Protein Domain Family
Csc1_I-D
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cd09711: Csc1_I-D 
CRISPR/Cas system-associated protein Csc1
CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; RAMP superfamily protein; predicted Cas5 ortholog; also known as CasA/Cse1 family
Links
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Statistics
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PSSM-Id: 187842
Aligned: 6 rows
Threshold Bit Score: 232.764
Created: 6-Feb-2010
Updated: 2-Oct-2020
Structure
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Aligned Rows:
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Sequence Alignment
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Format: Row Display: Color Bits: Type Selection: 
NP_942301   9 LTLHDNVFFASREMGILYETEKYFHNWALSYAFfkg--------tiIPHPYGLVgq------nAQTPAYldr-------- 66  Synechocystis sp. ...
YP_327281   8 LTTHGKVGFASREVGRMADTDPYILNTALHYAL-------------GLAGGNYVd-------vTHQPTYi---------- 57  Natronomonas phara...
YP_503298  14 LEMMSELFFASLEPGNNYTTRPLILNTALYYAL-------------GYCSGRYVnvpvkkgsaKQNPTYv---------- 70  Methanospirillum h...
YP_324666   9 LQLHDSLYYATREIGRLYETEPIIHNYALCYALglidseiysttvaEEHSYRYFc-------pEQVPKYe---------- 71  Anabaena variabili...
NP_485603  14 LYCLEPVFFASRELSDTYYTEGVIGNYALTYALg-----------rVNSPYRLQgq------aTGRPTYk---------- 66  Nostoc sp. PCC 7120
YP_022784   7 ITNISPVQYYTVQSSGGMLTGPFIGDLALDYASay---------slGELDYHKLd--------MKRPNYneiknfsilws 69  Picrophilus torrid...

NP_942301  67 -dreQNLLHLNDSgiYVFPAQPI-------------------HWSYQINTFKAAqsayygrsvqf-ggkgatknypiNYG 125 Synechocystis sp. ...
YP_327281  58 ----EDTADIVDEv-YVTPATPVavesesirteylttnrnarADTYATPNYPAEddptgk-----------asqnlpTFE 121 Natronomonas phara...
YP_503298  71 ----EDTASFYSKl-YVSPAKPVksirfas-----eitnarsDEYIQYNTYEKQmns-----------------ptgKYG 123 Methanospirillum h...
YP_324666  72 ----EHLTPLNQQgiYVTPALAIshsa------------ilnTWKYANNNYHVEmektq--------------knipSFG 121 Anabaena variabili...
NP_485603  67 ----EDLQPIAQDf-YILPASPVgrvtfrfe---rfnalsdaYWYAMTNNRVATaredlplqrqgkkpssfrpsnfpQTG 138 Nostoc sp. PCC 7120
YP_022784  70 vavpENVIKNNIF--SVNYMKMMyrnt------------mlgIDYNGTNLNPAYrvgs---------------ymykNFY 120 Picrophilus torrid...

NP_942301 126 RAKELAVGSEFLTYIVs------qKELDLPVWIRLGK-WSSKIRVEVeAIAPDQikTASGVYvcnhpLNPLDCpANQQIL 198 Synechocystis sp. ...
YP_327281 122 RERALAPGNHFRFYVFpygrtaksAKETLPSYIRLGK-KRGKGRVRY-RIVEAE--RKSGTFslghpLSIYDH-DAQPLG 196 Natronomonas phara...
YP_503298 124 VRKQILPGGKFVFFVLsf----dgNEPDLPVYIRLGK-KRSKASVTW-SECPVT--RKKGSFilnhpVLVDDL-TQIPSR 194 Methanospirillum h...
YP_324666 122 RAKEIAPESEFEFFVIs------qKQLKLPKWIRLGK-WMSKAEVTV-TELPKPk-NTEGVFtcthpLNPLDVmFTNQVI 192 Anabaena variabili...
NP_485603 139 RLRMIERRNKFQTLVF--------GNYQLPNYIRLGK-FMSKVKVNVlNEFPVTl-LPEGEYqsqhyLNAADLpQQIEAL 208 Nostoc sp. PCC 7120
YP_022784 121 FVQPIRPGNKFYAAVKtd-----lGIEKLPAALRVGNgKTGLLKIKY-KSVNME--DLNNIY-----INLFTI-KNIFNK 186 Picrophilus torrid...

NP_942301 199 LYNRVVMPPSSLFSQSQLQGDywqi-------drnTFLPQGFHY 235 Synechocystis sp. PCC 6803
YP_327281 197 GVVMRQMQPTPLWFEGKFEADhyaiesp-tesadrVYYPAGAKF 239 Natronomonas pharaonis DSM 2160
YP_503298 195 DISFKRMQPFDVIERGSFEGEyiqiqrggkekkedVVFPASIRF 238 Methanospirillum hungatei JF-1
YP_324666 193 SYDVVNMPPVSLIQNVQMRGQhyyfd-----dvknLKIPARMEY 231 Anabaena variabilis ATCC 29413
NP_485603 209 AFDLISIPPAPIIKNLHFRGAawq--------vgeMIVPAGLHF 244 Nostoc sp. PCC 7120
YP_022784 187 DFNVDNLHIYYVLNHYVMAGPv-------------TGGVMHELY 217 Picrophilus torridus DSM 9790
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