Conserved Protein Domain Family
Csc2_I-D
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cd09709: Csc2_I-D 
CRISPR/Cas system-associated protein Csc2
CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; RAMP superfamily protein; predicted Cas7 ortholog; also known as Cse1 family
Links
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Statistics
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PSSM-Id: 187840
Aligned: 5 rows
Threshold Bit Score: 331.078
Created: 6-Feb-2010
Updated: 2-Oct-2020
Structure
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Aligned Rows:
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PubMed ReferencesClick to see Conserved Features Help
Sequence Alignment
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Format: Row Display: Color Bits: Type Selection: 
YP_503299  25 PKQNYVSILILRELQSAARFTTDGt--eANSSIIRIGDEe------VTVGKLFGRKQVASDRRIAKALQRdliaekmnsF 96  Methanospirillum h...
YP_324665  20 PMGKYAHFLTIRITESYPLFQTDGe---LNKARVRAGIKdk---ttISRLSMFKRKQSTPERLVGRELLRk-------yE 86  Anabaena variabili...
NP_485602  18 PKGRFITLVILRTTHSETIFRTEGsgepMCSEFVQAGLEgenqktiIQRLVMTKRKQVAPERRYGREHLRa-------hE 90  Nostoc sp. PCC 7120
YP_327280  24 PGTNYTTLLVLRELDSHAIFTTNGqd-aDITSLSVVGDSgs---ieYSPGLMFMRKQTGSDRRAGKAIQRel------lE 93  Natronomonas phara...
YP_256472  32 PRGRVVNVYVTLQAENELLIRHEGg---EDISLATLGSE-------KYPIILYDKIQSAWRRNLLALLRK---------D 92  Sulfolobus acidoca...

YP_503299  97 YKKggw-----------sgCSMEVTk-----------MCQKCPECALFGSAASe---gDMSVTSRVMYDEAYTIRGINSV 151 Methanospirillum h...
YP_324665  87 LVKpe-------------dCEYNVN------------FAMDNPDCIIYGFAIGd----SGSEKSKVVVDTAFSITAFDES 137 Anabaena variabili...
NP_485602  91 LLYtnpk--------dgslCSLNTNa-----------PCEMCVDCFLYGFAAGg----GGAQKSRIWTEDAFSILPASDV 147 Nostoc sp. PCC 7120
YP_327280  94 YDRs---------------DSMDVNd-----------MNPQSVESALYGSAASgdddvDIGVTSRVMYDTAFTVRDASAC 147 Natronomonas phara...
YP_256472  93 YDKhiseidalrgksnpwnCMLRPTsaakreeekmggLCRECPNCMTFGFAVAed--aKYNLKSRVEGDLFIATTPEQKS 170 Sulfolobus acidoca...

YP_503299 152 VEEYFQNAPgDDYAKKA-----------TSGIREPDFFKEGTLFPCVVTLRDVTCEEVLFFLNITDRNTRYGATGTRFGK 220 Methanospirillum h...
YP_324665 138 HETFTLNAPfENGTMASkgengskpgevTSRINQQDHIRPQVFFPSIVTLKDPTEASFLYVFNNIIRTRHYGAQTTRTGR 217 Anabaena variabili...
NP_485602 148 VGDRTINAIyETGTMRDekg------naSTALNTSEYIKPGVHFLDVVTLKDVTADELRYIIGNILFTSRYGAVSSRVGR 221 Nostoc sp. PCC 7120
YP_327280 148 IDEKFQNAPgEGYAKGS-----------TANIREPDFFEPGTLFPCTITLRDATPAEVAFVTAITSRNKRYGAATTRLGR 216 Natronomonas phara...
YP_256472 171 VVVRTFNAV-DDATKTTfiet---egtrTGSLFRLSLVKGGTLFVGKVSMKDVTPAEFSVLVLSLATTARIGGNTTDFGK 246 Sulfolobus acidoca...

YP_503299 221 TRNHILGVFASNREGPSSLEIsrgvalrlaggdevrlpdsesLKRVLELDSlp----lHDVKKNALEVYQHLlkthRISG 296 Methanospirillum h...
YP_324665 218 VRNELIGVVFADGEITSNLRWtqaiydq--------mqtnnsLKSPDPLDE-------DEVTNAAKNAIETLmseeFIVH 282 Anabaena variabili...
NP_485602 222 MENEILGVFGSITELPSSLELvqat--------------ydaLGKPLEHPLn-----iNQLITASKQVIANWkn-kRGVS 281 Nostoc sp. PCC 7120
YP_327280 217 VNNRILGLYTGSEEGPSNRELtaetiv----------sfaseSNRTLGDVVqapalnaDQAAAYVREAYDTAc--tETVA 284 Natronomonas phara...
YP_256472 247 VKIRIPAVILSPYEMSSGLDL---------------------FNSAKGLDSv------DQVNAKVRERVKNFskegLVYT 299 Sulfolobus acidoca...

YP_503299 297 IDLGESEVTALL 308 Methanospirillum hungatei JF-1
YP_324665 283 TDFIGDAFEPLL 294 Anabaena variabilis ATCC 29413
NP_485602 282 VQLSEAELADLL 293 Nostoc sp. PCC 7120
YP_327280 285 QTPVDDEVLDEL 296 Natronomonas pharaonis DSM 2160
YP_256472 300 FDDLGDLVVKKL 311 Sulfolobus acidocaldarius DSM 639
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