Conserved Protein Domain Family
Csf4_U

?
cd09708: Csf4_U 
CRISPR/Cas system-associated DinG family helicase Csf4
CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; DinG family DNA helicase
Statistics
?
PSSM-Id: 187839
Aligned: 3 rows
Threshold Bit Score: 859.276
Created: 6-Feb-2010
Updated: 2-Oct-2020
Structure
?
Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
?
Format: Row Display: Color Bits: Type Selection:
YP_195547    130 EQAQVFLn------LRGAFEGGQIALVEAATGVGKTLAMLLAAeQCLRDHPG-GRVAIAVPTIALMRQFAEAYGRLPgSL 202 Azoarcus sp. EbN1
YP_516038    124 EQSRFYAglekllsIEDPAQLPRVLFAEAGTGIGKTLAYMAGVhAFLKSLKT-AQTAIAVPTHALMDQTLREWRKVQ-DA 201 Rhodoferax ferr...
YP_002425510 141 EQALFYRn------CLTSLRQKRIGMLEGSTGVGKSRAMIMAAlTMAKERPDlQKIVITAPTLAVLGHLWSELERLTaEG 214 Acidithiobacill...
YP_195547    203 SMHPLHAVF--GRREFVSRDAVRELLKNpk--------------yfDAMQAVERWIELDGEplpdspfqkrwlvstlkqi 266 Azoarcus sp. EbN1
YP_516038    202 LGEPVSTATliGQNEFVSVQALTDLLPDidqtvreqittwigksgpCDPDAVIRHAWTVGAlrkvaplf----------- 270 Rhodoferax ferr...
YP_002425510 215 LAGGVQAGFfpGSQEFIDPGKLQEYLDQs-----------------GDKDPAVQLWMGQGGp------------------ 259 Acidithiobacill...
YP_195547    267 apalpvavcCLSDTPdeddpgfqsyleqfeheirpeseillcthamlgystKQRHWVASRSDEVRALRt--REIDLMlai 344 Azoarcus sp. EbN1
YP_516038    271 -nrmrdvtlSERDTDddpgyvsyreq--------------wdslprcsivvMSHAMLASLVLRRLTAQa-rATKDSAa-- 332 Rhodoferax ferr...
YP_002425510 260 ---------LIHEAAlir------------------------------amsRAPTKMHHMTHDLKALAtnlNPQDFVt-- 298 Acidithiobacill...
YP_195547    345 rAEENGKEka--rlLQALREIeaeRIRCGAEASEHA----------GKLPPFAYLLVDEAHQFEAAMASANASYLSLRDL 412 Azoarcus sp. EbN1
YP_516038    333 -IKEATAAwvaltsTEREKRLy--QVLNDIYAQGECed------glDLLPNLDLLVVDEAHTLEDSFNLVLSQNISMYRL 403 Rhodoferax ferr...
YP_002425510 299 -EDDEDKR------LVESREY---ARKSRILFCTHTmlglafrdkwGLFGQPDILIVDEGHLFEQNISRVYSNALSLRML 368 Acidithiobacill...
YP_195547    413 LRAAEYCH-KEGYG-ISAAKVAAIRAGIERLRAISLf--AKGETIAL-SERTSAAEQVRASLAEILdacsvgrvrnrdeN 487 Azoarcus sp. EbN1
YP_516038    404 HKDIERLHaSHPKQ-ITSATVAAMTDVWQRLRRSGSa--SVDKVMSLhDDDKNCLIDLGAILKGVLeik-------stpK 473 Rhodoferax ferr...
YP_002425510 369 RFHLYVSK-RKTGAgKGSVVSKAVSAVSHCIQQVSAldvGDGQTLCL-DAGNKELETLFSDLDAAL-------------N 433 Acidithiobacill...
YP_195547    488 RSAHAKLREVEYAKIILRAAVNSQSSRQHAL-----VKFSPVRTYPQLYVGAGRVDGLMGSLWGSVS-GAACVSATLL-- 559 Azoarcus sp. EbN1
YP_516038    474 NQLGSNAGFRRIAQIARSVTLALLAGEQYGGsigamIDWSPDRKWPRLMVGRLSTAREMNYLWLVVArRSILVSGTLYee 553 Rhodoferax ferr...
YP_002425510 434 KKALSVVKDVKKARFILDNAITAIQGKASTVy----LQFSPDRRFPSIISGREDLGKVLGGIWKDIThGAIIASATLY-- 507 Acidithiobacill...
YP_195547    560 LPKAdggySSYHHKRLLSIPDGRFHAFAPISPSWLREaIQSVHLPVA-----EPRLC-------PPSRGDKLTSAALqea 627 Azoarcus sp. EbN1
YP_516038    554 LPQV----SCETARRSLSVPFDMMMTMEPVYAPWQYKlVTACVVADTcaadgRRRFLrpvvkdsSPEAVHVEFNALYa-- 627 Rhodoferax ferr...
YP_002425510 508 LPDRfgqmKCDYLKSVLALPLSRLDTPSPIVAPWVRN-IPHLHVPNA-----KAAFLl-----sRPVGKTEQGDMNL--- 573 Acidithiobacill...
YP_195547    628 ertWLEAVCEEVTRIQASAA-GGVLVLMTSYHSIQVLSA-LMPFQLRAS-AVFGTADATLAEQASAFLRLRMAGRKAVWF 704 Azoarcus sp. EbN1
YP_516038    628 --gWVEDVGRYLVDAHKVAQ-GGMLVLGTAFRDIADIGQ-LIEKNTSHP-VLVHHSGVPLASLRDQFLAAANGGKRPVLL 702 Rhodoferax ferr...
YP_002425510 574 ---WLYNLSLSTAAILRKKQhGGTVILTVAFSHASAIGQrLVELGIPAErIVIQSEKNRFSSAEQQYRALYANGIQPILI 650 Acidithiobacill...
YP_195547    705 ATGGAWTGLDIggHEPLHTllgqpalsaeedNVLTDVVIPRLPFG-LNKSVTHEYRIRNEPAVpweVLDM-ILRLKQGMG 782 Azoarcus sp. EbN1
YP_516038    703 AVSGAWTGFDL--HSPINP------------NALTDLAILNAPFGaITRSLARQKRARQKNGIf-eIVGLtVVLIRQGVG 767 Rhodoferax ferr...
YP_002425510 651 AAGAAWTGIDL--TDKSVSpd--------kdRLLSTLILTCAPVG-LNRSLSMLKRIEKTSVRp--IINEsLMMLRQGLG 717 Acidithiobacill...
YP_195547    783 RLIRRAGLp-NNRRIHLLDSR 802 Azoarcus sp. EbN1
YP_516038    768 RLVRSPDTp-ANRRIHWLDAR 787 Rhodoferax ferrireducens T118
YP_002425510 718 RIVRHPDMqkIDIWMLDGRPW 738 Acidithiobacillus ferrooxidans ATCC 23270
| Disclaimer | Privacy statement | Accessibility |
NCBI Home NCBI Search NCBI SiteMap