Conserved Protein Domain Family
Cas6-I-III

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cd09703: Cas6-I-III 
CRISPR/Cas system-associated RAMP superfamily protein Cas6
CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas6 is an endoribonuclease that generates crRNAs, predicted subunit of Cascade complex; RAMP superfamily protein; Possesses double RRM/ferredoxin fold; also known as Cse3 family
Statistics
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PSSM-Id: 187834
Aligned: 6 rows
Threshold Bit Score: 249.233
Created: 6-Feb-2010
Updated: 2-Oct-2020
Structure
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Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
AAN50387      7 IELNFPVLGSLLPADHGYGLYSAICHLCPTLHEHd-sLSIQTISGLpd--rpGILRLTaNSQLRIRIPVEQIPLVYPLAG 83  Leptospira inter...
YP_323992    30 MDLTFSLTGETLPFDHGYELFSAIAHFEPKLHTLd-tLGIQTIAGIpk---dGVINLTqNSRLRIRIPVNQVRLVYPLAG 105 Anabaena variabi...
YP_316245    19 IDLQFELAGSTIPADNAQMLCDALLGVLPWLGEDp-gSGIQHLKGAatnsgdTVLNINrRTRLFMRVPKTRVDDMQRLIG 97  Thiobacillus den...
YP_635378    31 VDLLFPVQGGPVPLDHAYLLFSALSRHLPALHERs-dMGVFSLRGVsn--trELLYLG-RGTMRLRCPIEAVATLLPLVS 106 Myxococcus xanth...
YP_635389     4 LDLLYPVRGGPVPLDHGYALFSALCTRVPALHERl-dLGVFTLRGEra--vgDLLHLG-RGTLRLRCSPEVVPLLLSLPL 79  Myxococcus xanth...
ZP_02730335   2 VDLVFPVRGGSVPTDHAYPLYGALSGAVPAFHDAqqsLRFAPLTGVrd--eaGRLRLApWSRLRVRLPAEAIPNVLPLAS 79  Gemmata obscurig...
AAN50387     84 KSLTIGIHKIQLSIPAIRILQPYSVLKSRITVIKGFSEPETFLeaAQKQLNAREISGRVILlqdp----kgnpKRNTIKI 159 Leptospira inter...
YP_323992   106 KSLRIGKHTIRLGIPDICLLQPAEKLRSRIVVIRGYEEPESFLvvAQRQLEQLGIQAIASIptka----ngkpIRRTIKI 181 Anabaena variabi...
YP_316245    98 EQLDLGGHALRIGSFKTRDFSPFANIYAHFIDTGSATEEQFVQd-VMRELDSRFQLRCGFIc----------gKQQTLQS 166 Thiobacillus den...
YP_635378   107 APLEIAGRRLSLGAPSLHALEPVPSLFARLVTFKHAMDEAAFVaaASRALEALGVQATLKVg-----------RRRIVRI 175 Myxococcus xanth...
YP_635389    80 TPLNVAGREVVLGAPVLRALEPASSLFARIVTFKHALDAASFLrgVSRSLEALACDARPVLg-----------RRRLVRI 148 Myxococcus xanth...
ZP_02730335  80 RALDVAGARVALGAPSVEALVPAPALESWLVTFKHGEEPAAFLatTRARLTELGVAGEPAVrafesgpragevRRRVVRV 159 Gemmata obscurig...
AAN50387    160 KrfTIVGFGLKVEGLNEKDSLELQVTGLGGKRRMGCGVFYG 200 Leptospira interrogans serovar Lai str. 56601
YP_323992   182 KrfTVVGFGLEVINLSDEDSLRLQIHGVGGKQKMGCGLFMP 222 Anabaena variabilis ATCC 29413
YP_316245   167 AsgPLFGHSLMLHDVPPHKSLQLQDEGLGRNRLLGCGIFIP 207 Thiobacillus denitrificans ATCC 25259
YP_635378   176 TgkKVVGFALELHGLSAEHSLRVQEQGMGGRRHMGCGLFLP 216 Myxococcus xanthus DK 1622
YP_635389   149 AgkRVVGYALELHGVSGEDSLRVQAQGLGGRRHMGCGLFLP 189 Myxococcus xanthus DK 1622
ZP_02730335 160 SgaAIVGYALLVSGLTAEESIRLQERGLGGRTKIGCGFFLP 200 Gemmata obscuriglobus UQM 2246
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