Conserved Protein Domain Family
Csx1_III-U

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cd09702: Csx1_III-U 
CRISPR/Cas system-associated protein Csx1
CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Protein of this family often fused to HTH domain; Some proteins could have an additional fusion with RecB-family nuclease domain; Core domain appears to have a Rossmann-like fold; loosely associated with CRISPR/Cas systems; also known as TIGR02710 family
Statistics
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PSSM-Id: 187833
Aligned: 4 rows
Threshold Bit Score: 442.415
Created: 6-Feb-2010
Updated: 2-Oct-2020
Structure
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Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
AAB85565      25 HGLFQSITNKRPDKIVFFGsems--kktvEYIKEEAEAQGKDLPEy---KFIEILDIDg--------VKELFDKFEEQMK 91  Methanothermoba...
BAD71940      13 EPLEVALAEHAPQGVVFLAs---------QASHPVAAELVRDYGGsfrhHTLLLEDAEslm---eayQKALLALRKALEW 80  Thermus thermop...
YP_001636954  31 DTAALLIAALRPERVAFLLtpe-----ttNFPAQMAERLGRQPDAgwlcKTARYTDINq-------vYRELRAVIEAWSD 98  Chloroflexus au...
YP_002523392  24 RPEAYALREARPDFVAFVCshaadfqagsLRFVDDYAALTGLPPEr--yEVVSLEDPDdlvacyqrlVECFADLRRRFPD 101 Thermomicrobium...
AAB85565      92 iygdQEVIIDYTSGTKTMTSIAFVMGILYRkelsVITGFRDRN----GTVQSGTESnieq-ntyQIYDKLNIRRFKELFN 166 Methanothermoba...
BAD71940      81 e--aTAIVADLTGGTKPMAAGLVLALTGRGvvfsYVGGEARDPg--tGRVLAGKERlrlledptARLGLKEWAGFTRAWN 156 Thermus thermop...
YP_001636954  99 le-rEQILVDLTGGTKPMTVGLAKAAYVLGlg-tVYIESDYAQ----NRVIPGTQRliepsdpyEVFGDLEAGEARRFFN 172 Chloroflexus au...
YP_002523392 102 ----AEFLADYTAGTKSMSAALVLAALDSEgrpeVQLRLVRGArghqATVIPGTESfapvsgvhDVRARRFVGLARLALE 177 Thermomicrobium...
AAB85565     167 HGRFETALQILENdvv------nheRKEAYIKLTRAYLHWDLFEHEEALDYLNsdevnsleeLEDVIKRNKSILGeiis- 239 Methanothermoba...
BAD71940     157 ALNLGMALAELESllrrdlspsearFYGAMKGVVEGLMEWDRFRHREAWERLSvhlplalavAEAWGHGAKVRVLkglea 236 Thermus thermop...
YP_001636954 173 AHDYVSAERIYADlarrvp-aedgtFYACMAQLARAYTQWESFDITTAVKTMAdlla-hplpARLALYQSTLHDHyqali 250 Chloroflexus au...
YP_002523392 178 RFDYAEAAATLDQalqrelsaalrtRLEHARNLCRAFDAWDRYELATAKTFLElyrr-dwhsWLTVLDQLTSVVHafapg 256 Thermomicrobium...
AAB85565     240 ---------------srngRRKYKYRPFLP--DLLANSRRRASEGRYDDAAARLYRALELIAQILIEe---eYGDETDSI 299 Methanothermoba...
BAD71940     237 llp---------hlkgiveAGPKPTFLLLQ--DLLANAERRAALGRFDDALARLYRALELAVEADVHer-lgFSLKDPRT 304 Thermus thermop...
YP_001636954 251 sldatikamsnqqqalttlANRQAILPLLG--SLYANALRRETQRRYDTAALLRYRCLELMSQHRLAtrgvwVEKPDLDQ 328 Chloroflexus au...
YP_002523392 257 qpd---------argsrltPLEQLRDPYIAveDILFNAERRATQSRYDDAVARVYRALELLVQLRLWl---gHRIDTSDV 324 Thermomicrobium...
AAB85565     300 NPDKYAMSTRAALKl---------------DGKK-HLALKNAYRLLECEGHDv--GRAFGKDNEILDLLriRNHSILAHG 361 Methanothermoba...
BAD71940     305 WPEGFPEGLRERILk--------------pRGLMdLLDAAFDLDLAFGEQGTl-aQRLYGEKNRLQALLqrRHESILAHG 369 Thermus thermop...
YP_001636954 329 LKAQIPDLDRSYRAvertlgfrerglqpnrDGQYsSITLLNGYMLLTALSDPl-iQTITLTDIRQRVNV--RNKSILAHG 405 Chloroflexus au...
YP_002523392 325 ELAGLPEAWRAKLAgrt-----------egNGPV-RLALVQAWDLLADLPDEplaGWLAAERPRLLQWTqhRNYSLLAHG 392 Thermomicrobium...
AAB85565     362 FESVNGEQYERFYDKVLEYARMI 384 Methanothermobacter thermautotrophicus str. Delta H
BAD71940     370 TRPVGEEDYTALRDFLMRLDERL 392 Thermus thermophilus HB8
YP_001636954 406 FRQITEAEYREFARVVEQLLDQF 428 Chloroflexus aurantiacus J-10-fl
YP_002523392 393 FAPVTATGWREHGQAGLALCRAA 415 Thermomicrobium roseum DSM 5159
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