Conserved Protein Domain Family
Csm6_III-A
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cd09699: Csm6_III-A 
CRISPR/Cas system-associated protein Csm6
CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Protein of this family often fused to HTH domain; loosely associated with CRISPR/Cas systems
Links
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Statistics
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PSSM-Id: 187830
Aligned: 3 rows
Threshold Bit Score: 483.267
Created: 6-Feb-2010
Updated: 2-Oct-2020
Structure
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Aligned Rows:
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Sequence Alignment
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Format: Row Display: Color Bits: Type Selection: 
tigr:SE2456      61 IQTVSPNTEVEIIIEN-VDNAQDYDVFKEKFHKYLKIIEDSY-EDCEIILNVTSGTPQMESTLCLEYIVYPENKKCVQVS 138 Staphylococc...
crjinra:str0965   1 MFSIAPNYEPELIIHDpIISDNEVHIFDVMFQRFSDILQEYYtKEDEFILNLSSATPQIKSALFVINRLNGINIKAVKVW 80  Streptococcu...
AAK47210         70 ITRLAPETDVRIVTYT-NPSVHRFDLFVPVFRNHLVELSAEF-PDRTILLNTSSGTPAMQAALVAINVFGIPRTTAVQVS 147 Mycobacteriu...

tigr:SE2456     139 TPTKDSNA--GIEYSNPKDKVEEFEIVNEVEKKSEKRCKEINILSFREAMIRSQILGLIDNYDYEGALNLVSNQKSFRNG 216 Staphylococc...
crjinra:str0965  81 SPEHASNE--NIGHDNDENIDELIKVNEDNKVNFIDRTIEDNAEKFSQALLKKTARDFIEKFDYKAALDILDQLSDFPNL 158 Streptococcu...
AAK47210        148 TPARALSKpgDRESPDAYDLELMWDANDDNQPGAPNRCFEATSAALGALLERANLKQLIVSYDYSAAVTIAADSRLPDQV 227 Mycobacteriu...

tigr:SE2456     217 K-------------------LLRKKLLSLTKQIKTHEVFPEINEKYRDDALkKSLFHYLLLNMRYNRLDVAETLIRVKSI 277 Staphylococc...
crjinra:str0965 159 KslreeirdvvnclskkkiaYIREKLYDFSRVFKNQSILSDILSFPLDDSQkKALNYYLMIDVLKEREHIADVLIKAKSL 238 Streptococcu...
AAK47210        228 Sn------------------LIRGAMHRSRLEHLVAPKFFKDTAFTYDPAN-KVAEYISALALLAKREQWAEFARSATPA 288 Mycobacteriu...

tigr:SE2456     278 AEFILKTYIEIHWPTLIIEKDgKPYLNDe---------DNLSFVYKYNLLLEKRKQNFDVSRILGLPAFIDILTILEPNS 348 Staphylococc...
crjinra:str0965 239 AEFVIEEIIKKDHEGLIVFDGnLPKLNPsfpdceaildDIDKKMKKSRGIEDTEERIFSVQSTLNLLSYLNILEFYEYDS 318 Streptococcu...
AAK47210        289 ITIVLRAAVAKHLPEDRYLDD-MGRVDR----------RKLEREPEIRCALKHPPKSPNAEWYLYTKDWLALLRQFAPDR 357 Mycobacteriu...

tigr:SE2456     349 QLLKEVNAVNDINgLRNSIAHNLDTLnldknknykKIMLSVEAIKNMLHISFPEIEEEDYNYFEEKNKEFKEL 421 Staphylococcus epid...
crjinra:str0965 319 QLQTAINGILSLNgERNKVAHGLSEIdtrl--lsrKKLKQLSENLRLLLVDCLGIDSSYFNYYDKQNKELTKM 389 Streptococcus therm...
AAK47210        358 VGALEVLGRFESR-VRNTAAHEIVSIsed---ritKDGGLLPEQLLKILARETGADLTLYDRLNDEIIRQIDM 426 Mycobacterium tuber...
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