Conserved Protein Domain Family
Csm6_III-A
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cd09694: Csm6_III-A 
CRISPR/Cas system-associated protein Csm6
CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Protein of this family often fused to HTH domain; loosely associated with CRISPR/Cas systems
Links
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Statistics
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PSSM-Id: 187825
Aligned: 4 rows
Threshold Bit Score: 221.274
Created: 6-Feb-2010
Updated: 2-Oct-2020
Structure
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Aligned Rows:
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PubMed ReferencesClick to see Conserved Features Help
Sequence Alignment
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Format: Row Display: Color Bits: Type Selection: 
AAM02506   18 LDADLDPGDAYRAARNPeaveei-------------geevleEALMELVEADPKRASAELNTLLRMAERAere--gleID 82  Methanopyrus kandl...
AAL62579   28 SLAVLSPEDPRQGVFNSls----------------------pDPFVKFAVEEPERCCAELNTVVKAARRWdrl--fsgDV 83  Pyrobaculum aeroph...
YP_476838  16 PDKNLEPQRPWLGQKTIgd---------------------peQALAWMKRTDLELISAETNTYLQLDPTS--------ND 66  Synechococcus sp. ...
NP_148493  34 PVRSLEPTVLKDVLETLkpcidpgrmddvecgrrlsrgseawKVVETLVSYAPFAYSAELNAMKYFISQStkdcsvtmLD 113 Aeropyrum pernix K1

AAM02506   83 SIALIPTKTANCRLCARVVAEYLREEGYAvwetEPVRAGVDPGe---FWWGLSDLL-ERLEDVGVTDPSRNVWVAATPG- 157 Methanopyrus kandl...
AAL62579   84 KAVYYSSDTAQGKFVASVLERSLCRVLRArqcvAGVKVAEGLGr--dFYGGLLKLAhLVKTDVYEARREGRLPYIVATGg 161 Pyrobaculum aeroph...
YP_476838  67 ALILLHSETPDGLECAQILKLFFEQELGQ----QQVSLVPLPG----INYELEGSSlERMAELLKQLAESARGIVTFAAt 138 Synechococcus sp. ...
NP_148493 114 EAILYHTDTHAGRVSAEIVKGFLERLCHVk---TYSKQVTGLGvfdrLFEGLSNLVrEAYCDIKVRIGRGNVVLLNLTGg 190 Aeropyrum pernix K1

AAM02506  158 --FKPEAAVLTLVASLFG-KPVFYVHEVMNELVEIPpa--mPVVTDPGFVLGL 205 Methanopyrus kandleri AV19
AAL62579  162 --YKPESTFAVIAAYIAGaLGVFYIHESFNDVVMLPmv--pLQLREELRRFAA 210 Pyrobaculum aerophilum str. IM2
YP_476838 139 ggFKAQAMIMAVVGSQLG-VPVCYIHEQYKSLVYLPyl--qPQVQPRIPRADL 188 Synechococcus sp. JA-2-3B'a(2-13)
NP_148493 191 --FKPESGALLLAGSLAGaSAAYYIHEAARKPVFIPiirlsPQVDQHLLEDAV 241 Aeropyrum pernix K1
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