3KG4


Conserved Protein Domain Family
Cas5_I
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cd09693: Cas5_I 
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CRISPR/Cas system-associated RAMP superfamily protein Cas5
CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas5 is a RAMP superfamily protein; Subunit of the Cascade complex
Links
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Statistics
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PSSM-Id: 187824
Aligned: 125 rows
Threshold Bit Score: 40.9273
Created: 10-Jan-2011
Updated: 2-Oct-2020
Structure
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Program:
Drawing:
Aligned Rows:
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PubMed ReferencesClick to see Conserved Features Help
Sequence Alignment
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Format: Row Display: Color Bits: Type Selection: 
3KG4_A         7 IRLHIWGDy-ACFTRPEMKvERVSYDVITPSAARGILSAIHWkp-----------------------------------a 50  Mannheimia succ...
Q8ZZL1         4 LLVKLRLPl-FSIKHYETYqVAATLPFIPPSTVVGALVQAAArgg---------------------------------lc 49  Pyrobaculum aer...
Q9UZX1        19 LKVEASPSgiIALRSLPQSkMRNALRYIPPSTLIGAIAYPLFhia---------------------------------gy 65  Pyrococcus abyssi
Q9YCM4         8 VVAELATPa-FSVKNPESYqVASPLPLPLPSTLLGGLMRGASllgsctggiasqscikktgrivkaaaplskpgqilgve 86  Aeropyrum pernix
Q5JGB2         8 LKVQLRPTgiIALRALPQSkMRTALRYVPPTTLIGAISYPLLhis---------------------------------dd 54  Thermococcus ko...
YP_001012845   8 SKVELAWG--FSVRYAGASaAQPALPIPPPTTIVGFYAEPLA-------------------------------------- 47  Hyperthermus bu...
YP_001040343   6 LRIEFLWG--HQSRIVGLSkTNPSYYYPPPTTILGAIAEPIAke----------------------------------yk 49  Staphylothermus...
Q57827         6 LVALLRFPf-YSFGKQSYQ-VRQSLLLPSPSALKGALAKGIIllg---------------------------------gk 50  Methanocaldococ...
Q8U334         4 LLVCLRFPf-FSVAKRSYQ-VRTSFLLPPPSALKGALAKGLIllkp-------------------------------eky 50  Pyrococcus furi...
YP_001435723   6 FELELAWG--FSVRYPMSSaAQLAPPLPPPSTAIGALAEALAitl--------------------------------glg 51  Ignicoccus hosp...

3KG4_A        51 INWVIDKIYVlkp-------------irFESVRRNELGakiseskvsgamkrksv-------adlytvieddrqqraaTV 110 Mannheimia succ...
Q8ZZL1        50 EGDCLAEVRGwiyk-----------ardVAAPTVKFPVvlkrargvleegk--------------lplsgeelggyfdAM 104 Pyrobaculum aer...
Q9UZX1        66 RGETLIDRRNp----------------rSAADKIKDLFlwvtvkgsikpiiygsilk--inrlhrgsvesavtsfpfaVM 127 Pyrococcus abyssi
Q9YCM4        87 WEVVLRRLRKvle------------pdsEEGSTRENRGnrvlde----------------------------lsrisdAL 126 Aeropyrum pernix
Q5JGB2        55 RGETIYEKKTfkskae-------sviglFKWVTIKTEGrpklygsllkintiy-----------rgkvqsavtsfpfaVF 116 Thermococcus ko...
YP_001012845  48 RLLGLAEYRGfpakrpcspaallaehtlAASAGLNSDSrsglvvhsdlshvatlpyqr-rrktgweklafaaqavgaaYG 126 Hyperthermus bu...
YP_001040343  50 LGENSASVRKllaslsan--llalglkpVNVLPIKYMDinrilavkltgktlgkknvvlpypnpkdldrsfdapargkTI 127 Staphylothermus...
Q57827        51 KGKSLDEIAK------------------KTVEELENKLiyvgakpykssiiktpil-----lkrlrnledqknpeksdAM 107 Methanocaldococ...
Q8U334        51 ASSSLDEAAL------------------KAIKEIESKLvdikavsvaplsplirnaf---llkrlrnlesgsnaeksdAM 109 Pyrococcus furi...
YP_001435723  52 ETIKVAGKAAkrgrkrs----keglcstAYAVFKATKGaafa---------------------------------lspES 94  Ignicoccus hosp...

3KG4_A       111 LKDVAYVIEAHAVMtskag-----------vdentTKHIEMFKRRALKGQCfqqPCMGVREFPAHFALId---------- 169 Mannheimia succ...
Q8ZZL1       105 VREYAYVAEKAVLVv-------------------pSAEAHIGRLEKALWLL---ERVGDTESYVSVRGVevlna--rpcg 160 Pyrobaculum aer...
Q9UZX1       128 YGEQDYSISFVYLLkee---------------avaNSTYTLKDFERAAWGI---SRLGSRESIVSVESVksg-----kak 184 Pyrococcus abyssi
Q9YCM4       127 LRGYITPYNPVYAVfv------------------aRGRDNANRIEKALWYI---DRLGDSESLVSARPVgrcqlaefrsk 185 Aeropyrum pernix
Q5JGB2       117 YGESTNSLTAAYFVded---------------alsESTYSAKDLERAAWGI---TRLGSRESIVSVEDVkmg-----kav 173 Thermococcus ko...
YP_001012845 127 PAARLYLALVVDVEgls----------------rkLGETVESIISALAWAG---WRLGSKEGLVSVIHAe---------a 178 Hyperthermus bu...
YP_001040343 128 FAPLDFDPPKIDILivfke------------nqiyVDRVKVDLDVDLLWDI---HRIGSKESIVSVMDV----------- 181 Staphylothermus...
Q57827       108 RREYVFAREILAIYvfr----------------rkLSEEEKDLMLKAVYLI---DQLGDTECVGNVIKTew-------ve 161 Methanocaldococ...
Q8U334       110 RREYTFTRELLVAYif-----------------knLTQEEKNLYLKAAMLI---DVIGDTESLATPVWAsf--------v 161 Pyrococcus furi...
YP_001435723  95 PVGVALKSEINRLLqapylnpgnvhegdeinkvrmFGVQAITSAYAPKGLLwmmVVLDEKELVGELRAIrkdl---kgee 171 Ignicoccus hosp...

3KG4_A       170 DNDPLplsqls--------esefnRDLGWMLHDIDfehg----------ntpHFFRAELk-----------nGVIDVPP 219 Mannheimia succi...
Q8ZZL1       161 AGEVDvavkla--------kvaggAHLVVRAGDEDgtlsdfav-platggkgYYTPTKIavksd----vfcaGDVAFPA 226 Pyrobaculum aero...
Q9UZX1       185 IREGKea---------------rtSYAFPFAGKEVegeg---------tlqaVFDWRRGigsys----npqyILMFYPD 235 Pyrococcus abyssi
Q9YCM4       186 SVNTP-------------------VALDSAVGGSFt---------------vVYAPARAgrtgrt--rrseaIAIAMPV 228 Aeropyrum pernix
Q5JGB2       174 FREANkvrta----------yafpFKGVNVHGKGTlqavvd-----wrlgigDYSNAKR-------------MVMFYPE 224 Thermococcus kod...
YP_001012845 179 VEPVTltggvfe------tilyqeGGLVEPFSKVEli-------------rdIYMWRLDpkllcggeaipdyILYHIPA 238 Hyperthermus but...
YP_001040343 182 KESRKiniergisitdysfpldrgIKVLDIIDKGWiyety--------inpyKLKEENKsildhy--lssnlLLYMVPI 250 Staphylothermus ...
Q57827       162 VKEEKapl--------------ktYVKFKKVSKMSingg----------iieNMLETPNfgnk------vkeEPYLLPL 210 Methanocaldococc...
Q8U334       162 KPEDKkapla---------fsapyTEIYSLLSSKIqakgkirmyiekmrvspEYSKTKGpq----------eEIFYLPI 221 Pyrococcus furiosus
YP_001435723 172 VMDALervtirrigvkegivstkkKEVGEVTKEEEve--------------sCFYARKGsvv--------rkLGKAVPI 228 Ignicoccus hospi...
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