Conserved Protein Domain Family
Cas5_I-B
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cd09692: Cas5_I-B 
CRISPR/Cas system-associated RAMP superfamily protein Cas5
CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas5 is a RAMP superfamily protein; Subunit of the Cascade complex
Links
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Statistics
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PSSM-Id: 187823
Aligned: 7 rows
Threshold Bit Score: 193.883
Created: 11-Jan-2011
Updated: 2-Oct-2020
Structure
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Aligned Rows:
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PubMed ReferencesClick to see Conserved Features Help
Sequence Alignment
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Format: Row Display: Color Bits: Type Selection: 
YP_360969     5 IVFEIRGpaaHFRKFYTNs-SSLSYAFPARTTLAGIIAAVLGlpkdsyysllt-------gnkahyalrlmTPVRKIMQT 76  Carboxydothermus...
AAM30258      4 LVFRAKSgyaKFRKPYTTt-SALTFLCIHPPAVKGLIGAVLGidkteiyrnt---------ldlkigiqvlSPVRKDMQV 73  Methanosarcina m...
NP_229597     4 LVFDVSApyaLFRRPYTTt-SSYTLPFPPRTTLLGLVGCVLGystpe-------------------rldsaKVAVQIKNP 63  Thermotoga marit...
Q9X2C0        4 LVFDVSApyaLFRRPYTTt-SSYTLPFPPRTTLLGLVGCVLGystpe-------------------rldsaKVAVQIKNP 63  Thermotoga maritima
AAR38875      4 LAFRISFfehLFKNHYTKa-FKLSYPTLLPTEALGLIGNICGyd--------------------------rKNVYKELKD 56  Nanoarchaeum equ...
vng:pNG4050  22 LSLTVRGpwgHFRRVEGNv-VKQTYRVMPRTTVAGLIAAVLGierdgyydlfapgrsaiaiepvrglrtlnMPVNALSTA 100 Haloarcula maris...
AAO36023      4 LKFSLSGrtaFFKKPDVNsfFYFTYGNVHKVALLGILGAICGyggynsqclnk--------eqiypefyekLKDINIGVV 75  Clostridium teta...

YP_360969    77 VKFvrtktlkevngsg---------gptmipteiilpVRGRELIYRVYFYHDDps-fqEELAKQLALGPKFP-VYLGRSE 145 Carboxydothermus...
AAM30258     74 LKLvsmkaekd------------------lfnfpvnaEFLRDPEYRIFVSWLPdk-ldELEDRLQNQMPIFT-PYLGVSE 133 Methanosarcina m...
NP_229597    64 LKFlrtgtnfvetkk----------dkkaskrtrislQLLKNPAYRVFFSWEDed-feRLKNLLEHSETIFT-PYLGVAS 131 Thermotoga marit...
Q9X2C0       64 LKFlrtgtnfvetkk----------dkkaskrtrislQLLKNPAYRVFFSWEDed-feRLKNLLEHSETIFT-PYLGVAS 131 Thermotoga maritima
AAR38875     57 LYFgstfldgyyieenitfiqfkketggkyrsgivksQVYHNSEHLVIIAGDEkklneKILNKIKTLNSDPIeNNLGKWL 136 Nanoarchaeum equ...
vng:pNG4050 101 ADNlkslnsrgklsvk--------lpdpmdlrqqhnyEVLVDPAYRIDVALADsetyrELRQTLEAGRSHYV-PSLGLSE 171 Haloarcula maris...
AAO36023     76 PKNekgyidkkiqvfnnsv---gyaskelggnlivkeQWLENPKWAIYILMDEnv-pkDLKDRLLNFKFKYI-PYLGKND 150 Clostridium teta...

YP_360969   146 FLAKIDFLgvfpgtaletnfvdtvvnlellkdeellfstlHGEDLRYLK 194 Carboxydothermus hydrogenoformans Z-2901
AAM30258    134 YIAKLDYEkrvnaelltksssidslvpsrfidlqhsdyhiFTDNIPVSN 182 Methanosarcina mazei Go1
NP_229597   132 FIARLNYVgkyeatrvadfpcevhtvvpntvkllpepshyLIFERVTRK 180 Thermotoga maritima MSB8
Q9X2C0      132 FIARLNYVgkyeatrvadfpcevhtvvpntvkllpepshyLIFERVTRK 180 Thermotoga maritima
AAR38875    137 LVKPIRYPyggwndffakdirildkfleveekenvrgyvpLDWVKSINE 185 Nanoarchaeum equitans Kin4-M
vng:pNG4050 172 HLANISFHgeftieegpddtvvsvdstlpnavddvvldsdTRCGIEESP 220 Haloarcula marismortui ATCC 43049
AAO36023    151 HMANITDVeyleniekldntnkldsifikdkyeiqkesknFNDLKNIIK 199 Clostridium tetani E88
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