Conserved Protein Domain Family
Cas5_I-C
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cd09688: Cas5_I-C 
CRISPR/Cas system-associated RAMP superfamily protein Cas5
CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas5 is a RAMP superfamily protein; Subunit of the Cascade complex; in subtype I-C this protein might be the endoribonuclease that generates crRNAs; also known as DevS family
Links
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Statistics
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PSSM-Id: 187819
Aligned: 6 rows
Threshold Bit Score: 257.753
Created: 11-Jan-2011
Updated: 2-Oct-2020
Structure
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Aligned Rows:
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PubMed ReferencesClick to see Conserved Features Help
Sequence Alignment
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Format: Row Display: Color Bits: Type Selection: 
Q07766              2 IALELSVPVACWRKGRARELVETEVLPPPATCYGALLSLVGe--qDRERHRGCRVTAGVln-aPVISTVLRTFWRSKNLK 78  Myxococcus...
NP_713373           4 LILYYEIPIASFRPYQSREYQDSYPVPPPSTLIGMSLSLCGlsmdHRKFFSSCEMCSAVadsnPARSTVLRRMRRLGDSG 83  Leptospira...
jgi:Ava_3493        4 IALKVEVPIACFRQSRAREYGETYPVPPPSTVYGMLLSLVGe--vDRYKHCGVKLAIALls-ePEKSTVIRTFHRFKTKN 80  Anabaena v...
EDX74464            3 TALKVEVPIACFRVSRAREYAQTYPVPPPATVYGMLLSMVGe--mDRYRHCGIKLAIALln-ePEKSTILRTFRRFKKKQ 79  Microcoleu...
jgi:Cyan7822_6462   4 IAVYIDVPFASFRQSHSREYGKTYPVPPPATVYGMLLSLVGe--wDVYLHCGVQLAMAMis-qPQISKVLRRIRRFKVKN 80  Cyanothece...
EAW36788            4 LILQVEVPMASFRNSRAREYSESYPVPPHSTVYGMLLSLVGe--tNRYKHCGVKLAIAMls-iPYKSVNLRTLHRFETFT 80  Lyngbya sp...

Q07766             79 VAKgndenaapdqqqlvidarlvvwcdsreepdsgesLEDRVVRAMREPGSVTRAGGWSLGESTHLINDARLlpegrpPA 158 Myxococcus...
NP_713373          84 RDPkqrrpeyqelvtg--------irgivayrglpaeLAKPMKTVLTTPEKIIRYGGLSLGESSFLVDVIRLfelpdtTQ 155 Leptospira...
jgi:Ava_3493       81 IHDsknnkpdyqelltnie---fivwvdagvdkakpnLVERLAEALTNPASINRFGGLCLGESRDLVNDVTLlpk-nyYA 156 Anabaena v...
EDX74464           80 IFDptnarpdyqellsdiq---fivwvasgndnaqprLCQRLTDAIANPETVDRFGGLSLGESRDLVNGINLlpe-dyRG 155 Microcoleu...
jgi:Cyan7822_6462  81 FSDdrntnpeyqevlsnik---fivwvaskneqaqptLRERIEQALIYPESVKRVGCLYLGESNDLVNKIKLisn-dyCF 156 Cyanothece...
EAW36788           81 SRIpkpelyelltnief-------ivaisgqeeenptLLERIVEAIHRPEELDRFDPLYLGESDHLVNQIFIcse-fpKD 152 Lyngbya sp...

Q07766            159 GCRAFLTAs-tGALTLPVWVD 178 Myxococcus xanthus DK 1622
NP_713373         156 SNWSWLIPdmkGSLDLPVWID 176 Leptospira interrogans serovar Lai str. 56601
jgi:Ava_3493      157 ESMRWLIRdeyGLLTLPYWVD 177 Anabaena variabilis ATCC 29413
EDX74464          156 ESLRWLVQqedGLLTLPYWVD 176 Microcoleus chthonoplastes PCC 7420
jgi:Cyan7822_6462 157 EERWWLMQdedGLIILPYWVD 177 Cyanothece sp. PCC 7822
EAW36788          153 KSLYWLIQnpdGDLTLPYWVD 173 Lyngbya sp. PCC 8106
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