Conserved Protein Domain Family
Csx1_III-U

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cd09686: Csx1_III-U 
CRISPR/Cas system-associated protein Csx1
CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Protein of this family often fused to HTH domain; Some proteins could have an additional fusion with RecB-family nuclease domain; Core domain appears to have a Rossmann-like fold; loosely associated with CRISPR/Cas systems; also known as NE0113 family
Statistics
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PSSM-Id: 187817
Aligned: 4 rows
Threshold Bit Score: 322.539
Created: 5-Feb-2010
Updated: 2-Oct-2020
Structure
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Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
BAC97573      18 ILLSIAGLTPQVITETLYGIHTEQQEnhqwlwPEEIQIITTRLGKEQILLGLLTKdsd--gySQLEKLCHDY-QRPVPYI 94  Vibrio vulnific...
CAD84024      14 ILLCVTGLSPQIVTETLYALAVARATpf---iPTEIHLLTTTDGARLARAALLHPd-----gGHFHALLNDQpQIGLPRF 85  Nitrosomonas eu...
YP_002247912   5 ILLCVIGMTPQIITETIYALAKKKIN------IEELHVITTLDGKRKLTETLINK-------GILSQLIHEY-NLPSINF 70  Thermodesulfovi...
ZP_02927119    4 ILVAVSGMSPAILTETIWALAQESPPv----vPDEVVVITTSRGEQDIQQQLLTPleawggqTVWAKLREDIfAGARLPK 79  Verrucomicrobiu...
BAC97573      95 DESTIYVIP---------DAQGNpVADARSKQDHEALASFIVRHVAELCAQDDIVLHASLAGGRKTMTFFLGYALALFAR 165 Vibrio vulnific...
CAD84024      86 DEDCIHIIS---------HHQEK-LADIRTPAENAAAADTITALVAQLTEDADAALHVSIAGGRKTMGFYLGYAFSLFAR 155 Nitrosomonas eu...
YP_002247912  71 SEKSIYLIK---------NFKNKpLSDIRTPVDNESAGEIICKVVHKLTARKNTILHCSLAGGRKTMGFYLGAALQMYGR 141 Thermodesulfovi...
ZP_02927119   80 ENLRLQLSPrvidlpdaaTGVRQkADDLRTHAQNDAAANFIVQTLAPYCDAQDHQVIASIAGGRKTMGALLYGAMSLLGK 159 Verrucomicrobiu...
BAC97573     166 EQDRLSHVLVDEEYENNRHFYYPTRKTH--VIPGR-GENSqlDASKANVTLAEIPFIRHKHMLP 226 Vibrio vulnificus YJ016
CAD84024     156 PQDNLSHVLVSSPFEGHPDFFYPPRQPR--RLVTRdGHHI--DTAEAIVTLAEIPVVRLRHGLP 215 Nitrosomonas europaea ATCC 19718
YP_002247912 142 KDDKLYHVLVNEEFENLPEFFYPPAKSKeiIIKTKdGQFLkkSTSEVKIELAELPFLRLKELID 205 Thermodesulfovibrio yellowstoni...
ZP_02927119  160 ETDRVTHVLVSEPFEFIRGFYYPGQPGPilEFRPFnGPPApaDPGDAVVELADLPFVPLRNKFE 223 Verrucomicrobium spinosum DSM 4136
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