Conserved Protein Domain Family
Csm3_III-A
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cd09684: Csm3_III-A 
CRISPR/Cas system-associated RAMP superfamily protein Csm3
CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; RAMP superfamily protein
Links
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Statistics
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PSSM-Id: 187815
Aligned: 10 rows
Threshold Bit Score: 274.61
Created: 5-Feb-2010
Updated: 2-Oct-2020
Structure
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Aligned Rows:
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PubMed ReferencesClick to see Conserved Features Help
Sequence Alignment
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Format: Row Display: Color Bits: Type Selection: 
AAS82434       5 KVIRIRSVLLAKTGLRIGMSRDQMAIGDLDNPVVRN-------PLTDEpYIPGSSLKGKLRYLLEWslggdyilk----- 72  Thermus thermop...
O27152         5 KNYIITGEILCRTGLHIGVSKDSIEIGGSDNPIIRD-------PVTRLpYIPGSSIKGKMRSLLELeldrv--------- 68  Methanothermoba...
Q59063         8 GKVILEGIIELETGMHIGGTKETLKIGGTDNPVIRD-------AFGRI-LIPGSSLKGKIRALLERkdgkyked------ 73  Methanocaldococ...
BAB59251       8 YNIIYNMEIEVLTGLHIGGSNEELKIGGTDSPVITTkylinnvEPCDLpYIPGSSIKGKIRSLLENvd------------ 75  Thermoplasma vo...
AAM05337      12 GKILITGEMKVVTGMHIGASKETVKIGGIDSPVIRD-------PMTDFpYIPGSSLKGKLRSLSEKslekelfais---- 80  Methanosarcina ...
CAD84032       5 TIHKITGTLILKSGLHIGAGDSEMRIGGTDSPVVKD-------PLTDQpYIPGSSLKGKIRSLLEWrhglvvatgga-py 76  Nitrosomonas eu...
NP_229606      7 GKYIIKGKIILETGLRIGGQELGVNIGGIDNPVIRN-------PLTGEpYIPGSSVKGKMRSLMERllnldisg------ 73  Thermotoga mari...
YP_001634196  10 GRIVLRASIELLTGLHIGGAAGGLEIGGLDKPVIRN-------PITNQpYIPGSSLKGKLRSLMEKvygapqtfrinegv 82  Chloroflexus au...
NP_217337      6 AKIEITGTLTVLTGLQIGAGDGFSAIGAVDKPVVRD-------PLSRLpMIPGTSLKGKVRTLLSRqygadt-------- 70  Mycobacterium t...
YP_190002      3 SKIKISGTIEVVTGLHIGGGGESSMIGAIDSPVVRD-------LQTKLpIIPGSSIKGKMRNLLAKhfglk--------- 66  Staphylococcus ...

AAS82434      73 -akdkhvyaSPDPKDPVARIFGlapender----slavareRGPTRLLVRDAYLTEDAKealertsarggLYTEIKQEVF 147 Thermus thermop...
O27152        69 ----snggpCKCGKCEICRVFGsaadsssssgptrtdssssSGPTRIIVRDAFPTDETVeewke-ssevvEGAELKYENN 143 Methanothermoba...
Q59063        74 --grgnylpHDCGECEICKIFGphds------------kniKEPVRVIVRDAYLQPEENkk-------dyDYLEIKVENT 132 Methanocaldococ...
BAB59251      76 -------ykGKNGDDIVSKMFGyypna----------gegiKRLTRLIIRDAFLDDGHIksae----darNVIEIKSENK 134 Thermoplasma vo...
AAM05337      81 hnpdinihvCTDEHCEICRLFGsskkdk--------neeqkHIPSRLIVRDMHLSNDKElfdi---dtglPYTEWKFENS 149 Methanosarcina ...
CAD84032      77 sfkhlaqdeNNSAGRDVIKLFGgapdkae------dqlvknIGPTRLAFWDCPLNGDWKkeaad--srhlLTTEVKSENS 148 Nitrosomonas eu...
NP_229606     74 --nkvrrheCEERECKVCRVFGstsk------------egnNIPSRLLVRDAFLTEDSKtklls-metdlPYTEWKTENA 138 Thermotoga mari...
YP_001634196  83 fihvptnpeEYQRYYQIAGVFGtlpnh---------kqltiDVPTRLIVRDVPLTRESEqelrr-lrtdlPYTEIKWEAA 152 Chloroflexus au...
NP_217337     71 ---etfyrkPNEDHAHIRRLFGdt---------------eeYMTGRLVFRDTKLTNKDDlear----gakTLTEVKFENA 128 Mycobacterium t...
YP_190002     67 ----mkqesHNQDDERVLRLFGsse-------------kgnIQRARLQISDAFFSEKTKehfa---qndiAYTETKFENT 126 Staphylococcus ...

AAS82434     148 IPRLGGNANp---RTTERVPAGARFR-VEMTYRVLDDLdee-------------yfGKYLLRALELLELDGLGGHISRGY 210 Thermus thermop...
O27152       144 LNRITSMANp---RNQERVPRGSKFG-FEIIVSEYDGDsd---------------nLRIVLEGLRLLEDSYLGGSGTRGY 204 Methanothermoba...
Q59063       133 IDRLKGTTIkggiRNMERVVAGSKFK-FEVVFNIYKESdk--------------elIKKFIEGMKLLEDDYLGGSGSRGY 197 Methanocaldococ...
BAB59251     135 IDPIESKATp---RFIERVRRGTKFK-GKIILSIYEGDnee-------------emIKCLKTGISLLEDSYLGGNGTRGY 197 Thermoplasma vo...
AAM05337     150 IDRISSAANp---RQIERIPAGAKFK-FELVYDAEEETele-------------edITRIQMALKLLEQDALGGHGSRGY 212 Methanosarcina ...
CAD84032     149 INRIAGTAEh--pRFIERVIAGARFD-FTLTLKVLEGDd----------------lLNTVLLGLRLLELDSLGGSGSRGY 209 Nitrosomonas eu...
NP_229606    139 LDRVTCKADp---RSFERIPAGAEFE-FEIIYTAENEKhik-------------edLENIATALELLEDDYLGGNGSRGY 201 Thermotoga mari...
YP_001634196 153 IDRVTSAAAp---RQIERVPAGAVFGpAEVVYSLYVGNgeqls--------dvirlFGSVYEAFTYLEDDYLGGMGSRGN 221 Chloroflexus au...
NP_217337    129 INRVTAKANl---RQMERVIPGSEFA-FSLVYEVSFGTpgeeqkaslpssdeiiedFNAIARGLKLLELDYLGGSGTRGY 204 Mycobacterium t...
YP_190002    127 INRLTAVANp---RQIERVTRGSEFD-FVFIYNVDEESqve-------------ddFENIEKAIHLLENDYLGGGGTRGN 189 Staphylococcus ...

AAS82434     211 GQVYFLHPERLTEDQEGWPL 230 Thermus thermophilus HB27
O27152       205 GKIEFKNIKIRERPVEYYRG 224 Methanothermobacter thermautotrophicus str. Delta H
Q59063       198 GKIKFRDIKLICKPKEYYEG 217 Methanocaldococcus jannaschii
BAB59251     198 GSVKITLGEPIKKGIDKYEE 217 Thermoplasma volcanium GSS1
AAM05337     213 GKVKFERVTYTGYPREYYVS 232 Methanosarcina acetivorans C2A
CAD84032     210 GKIKFAELKLDGTDLMEQFH 229 Nitrosomonas europaea ATCC 19718
NP_229606    202 GKVKFSIEKVIFKSADYYKG 221 Thermotoga maritima MSB8
YP_001634196 222 GQVRLRDITVLARRLESGRY 241 Chloroflexus aurantiacus J-10-fl
NP_217337    205 GQVKFSNLKARAAVGALDGS 224 Mycobacterium tuberculosis H37Rv
YP_190002    190 GRIQFKDTNIETVVGEYDST 209 Staphylococcus epidermidis RP62A
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