Conserved Protein Domain Family
Cmr4_III-B

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cd09682: Cmr4_III-B 
CRISPR/Cas system-associated RAMP superfamily protein Cmr4
CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; RAMP superfamily protein; This protein is a subunit of Cmr complex
Statistics
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PSSM-Id: 187813
Aligned: 10 rows
Threshold Bit Score: 232.668
Created: 5-Feb-2010
Updated: 2-Oct-2020
Structure
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Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
AAM02512    5 LPYFLVCRTPTRAGAGqraTDVIDLPLQREaHTKLPVIYGstLKGALRHAtlrklse--eldgetsEGLvDAVFgd-rPG 81  Methanopyrus kandl...
AAL81250    4 YLVGLYTLTPTHPGSGt-eLGVVDQPIQRErHTGFPVIWGqsLKGVLRSYlklv--------ekvdEEKiNKIFgp-pTE 73  Pyrococcus furiosu...
AAS82448    5 ALLFLHALSPLHAGTGq-gIGAIDLPIAREkATGIPYLPGssLKGVLRDRasaw---------drdTLF-AVFGp--dTE 71  Thermus thermophil...
AAQ66958    4 AAYMIHCLTNMHVGKGdatYEVVDKCVQRDvTTGMPCIYSssLKGALRQFfskqgfaelnyvfgkdQSRdKKNNgn-eKN 82  Porphyromonas ging...
BAB67070    9 YPVYIFTVTNSHVGSGssvSEEVDLPFQRD-HLGYPTIYAssLKGAIKSYlinti------sdseeRKNvEILFg---KD 78  Sulfolobus tokodai...
NP_241196   7 QLFFVHCLSPVHIGTGe-gVGLIDMPIMRErVTKWPLIPGstTKGVHRDYfvqq--------rdkeSWIrTAFGagkgEA 77  Bacillus haloduran...
NP_213262   6 QLLTLYAVTPIHIGSGq-sISFIDLPIQRErHTGFPILRSngIKGALRSVaerv---------wkdKAKvETVFg--pED 73  Aquifex aeolicus VF5
NP_229589   4 RVFLLYAETQVHAGTGf-eIGVVDLPIQRErTTKFPIIHG--IKGALRAYfrslik-----edkidEKKiEEIFgsepKS 75  Thermotoga maritim...
NP_343135   4 LFVLAYAITNLHPGAGr-gYGIVDMPVQRD-QMGYPIIYSsaFKGPLKALcagdaindhgridckkKGEcCCLFgs-ePE 80  Sulfolobus solfata...
NP_342945   5 YLVLAYAITPIHVGAGkssTGVVDSPLVRD-SIGYPIVYGssLKGSLKSFlia-----------knESLaKCVFgg-kPE 71  Sulfolobus solfata...
AAM02512   82 EGSPSPGVVAFSDAVLLAMPVR------CEPGfLAWVTSpyqlgrlyevleltgeledlre---------aveevlndck 146 Methanopyrus kandl...
AAL81250   74 KAHEQAGLISVGDAKILFFPVR------SLKGvYAYVTSplvlnrfkrdlelagvknfq--------------teipelt 133 Pyrococcus furiosu...
AAS82448   72 NASEHAGAVQVGDAKLLLLPVR------SLYGvFALATSpyllerfrrealmaglqppgv-----------pglrdptqv 134 Thermus thermophil...
AAQ66958   83 EEEHSVGNFTFFQANLLAYPVQ------TTQEgATYILKt---------------------------------------- 116 Porphyromonas ging...
BAB67070   79 STPDEVSKVVILDAVLLLIPVRiipiskDFEGvYSYATTeelletaksyldav--------------------------s 132 Sulfolobus tokodai...
NP_241196  78 DAEGNAGSIVMSDARILAFPVA------SYYGtFAYVTCpmvikrlerdmgaanvsyfsnliekvegwekklstnedkal 151 Bacillus haloduran...
NP_213262  74 DASKFAGCVSITDARILFYPVR------SVRGvFAWITSpivlrrfqedlrsigkeinikvlkn---gkevpsnlnleen 144 Aquifex aeolicus VF5
NP_229589  76 DKGTVPGSLSFSEARILLFPVR------NPDRlFVWVTCplvlikfaksvgdndvvk-----------------eleean 132 Thermotoga maritim...
NP_343135  81 EEESSKGMLNVMDLPLFSVPAP------TFDG-FVQVTTnylidrarnifeais-----------------------hin 130 Sulfolobus solfata...
NP_342945  72 EENILTSKYVLTDLIPVFYPVS------SIDEgYIYITTrylinhiedlmsrl-------------------------gi 120 Sulfolobus solfata...
AAM02512  147 dprgngalapeeGTLLLDRIRVRAEASDAvgDLAGVLSETvfegapephfrryveerlvvlgdgafadLVNSCTERVVRV 226 Methanopyrus kandl...
AAL81250  134 dtaiaseeitvdNKVILEEFAILIQKDDKgiLESVVKAIEqafgnemaekikg---riaiipddvfrdLVELSTEIVARI 210 Pyrococcus furiosu...
AAS82448  135 llapgsrllgdgEKVYLEDLDLKAQGEEGvaAWERWLAERteapvlgrla---------vvhddlmgfLLETATEVVARI 205 Thermus thermophil...
AAQ66958  117 ------------NKTLQDPIKELANLFSApsNIEEMLPKEte------------------------kdLSNETLEQLPVI 160 Porphyromonas ging...
BAB67070  133 nllrtqnteknvDFFLAGNGDKELIVNESyfKFKKDDELKksysilippeik----svmvfrgntgrdIINRSLIRVRRI 208 Sulfolobus tokodai...
NP_241196 152 ighrcevtdennEKIYLDEFELSVVIDGTfgELTNSLAKLvfkddhfsqella--srlvlvsdesfqyFVTQCSEITPRI 229 Bacillus haloduran...
NP_213262 145 eailfsdglikdGKLFLEEFAFNPILNAP--ENVDWDFFNtiipsdelvgllr--thlvivsdnvfrdLVNYAVEVRTRI 220 Aquifex aeolicus VF5
NP_229589 133 idygkavsfygsGEVFLEEVKLEPFVGELprTRELISKISncapvdylkkkme--sdvvvvndvlfseIVQAMTEVVPRV 210 Thermotoga maritim...
NP_343135 131 gylgslgneikaLLDAQGNKSVEVYDTEAkvVNFDPSSFKllsslplfnn---------rlaisddkrVIDKSLIIYTRN 201 Sulfolobus solfata...
NP_342945 121 gslykeskekseVRIFLGKISTELSLQLSdeVRSLGNLIKdknrvyvl-------------dnsiglsAVESALTRVTRT 187 Sulfolobus solfata...
AAM02512  227 RLN-EEKTVEQg-PWYEERVPEGTVFFGTLNVRhdtvppk-------ngvdarKVLFGRwepdgvpdgddrklealkeaa 297 Methanopyrus kandl...
AAL81250  211 RINaETGTVETggLWYEEYIPSDTLFYSLILVTprakd----------ndmalIKEVLGkin------------------ 262 Pyrococcus furiosu...
AAS82448  206 RLDdETKTVAKgaLWYEESLPAESLLYALVRADrsfrkgk------elrpegvWGLFRGvlee----------------- 262 Thermus thermophil...
AAQ66958  161 ARNqLDNGKSEn-LWYEEVVPAESRFVFFVSYDde----------------eiFTKFDKiiq------------------ 205 Porphyromonas ging...
BAB67070  209 RIDrEKKTASErgLWSEEYVPRGTYFFTIILVRsdkek----------nineiFKKFNDkl------------------- 259 Sulfolobus tokodai...
NP_241196 230 RLKaEEKVVDDgaLWYEEYLPTETLLYGLIWCEkmdq------------vkesWKRLSKg-------------------- 277 Bacillus haloduran...
NP_213262 221 RINqATGTVERgaLFTEEFIPSESIFYSLLNISephnkev-------fekaekVREEVKdlin----------------- 276 Aquifex aeolicus VF5
NP_229589 211 RINrEKKTVEEggLWYEEYLPQDTVMYFVVRKTyygnked-------sgkdslMEVFENevn------------------ 265 Thermotoga maritim...
NP_343135 202 RLNlLTKVVEEggLWSEEYIPMGSIFIGGMIIDnvrnkfcdelskiscdsrlfLHHFSRifnadki-------------- 267 Sulfolobus solfata...
NP_342945 188 ELDdNTKTSKN--IWSEEYIPQGTILLSGIFEReisnsycee---lnrnnvniDNEFLKlid------------------ 244 Sulfolobus solfata...
AAM02512  298 geleagvlgavadgsgdgyldlRFQVGGSETVGFGLVR 335 Methanopyrus kandleri AV19
AAL81250  263 --------------------gkYLQIGGNETVGKGFVK 280 Pyrococcus furiosus DSM 3638
AAS82448  263 -------------------gggVLQLGGKATVGRGLCR 281 Thermus thermophilus HB27
AAQ66958  206 --------------------ekVIQIGANGSIGYGFCK 223 Porphyromonas gingivalis W83
BAB67070  260 --------------------lnYIIIGGHETIGKGIVR 277 Sulfolobus tokodaii str. 7
NP_241196 278 ---------------------rVLQVGGNATVGRGRVR 294 Bacillus halodurans C-125
NP_213262 277 -------------------rckIIQVGGDESLGKGFIR 295 Aquifex aeolicus VF5
NP_229589 266 --------------------geLINIGGKETVGKGMMW 283 Thermotoga maritima MSB8
NP_343135 268 ---------------sedvylfYLNIGGKESIGKGLMK 290 Sulfolobus solfataricus P2
NP_342945 245 --------------------nvSVFIGGKESIGKGLTK 262 Sulfolobus solfataricus P2
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