Conserved Protein Domain Family
Csy3_I-F
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cd09677: Csy3_I-F 
CRISPR/Cas system-associated RAMP superfamily protein Csy3
CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; RAMP superfamily protein; predicted Cas7 ortholog
Links
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Statistics
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PSSM-Id: 187808
Aligned: 6 rows
Threshold Bit Score: 495.099
Created: 5-Feb-2010
Updated: 2-Oct-2020
Structure
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Aligned Rows:
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PubMed ReferencesClick to see Conserved Features Help
Sequence Alignment
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Format: Row Display: Color Bits: Type Selection: 
lhbprmlnih:CBU_0159  21 DIASVLSFEKKLIPSDGYMFGtswDKKSEv---tPLKLREKAVRGTISNRFNkndskTFLDDPMKLDADVERp---NLQR 94  Coxiella...
AAQ59426              5 ENPSVLAFERKLDPSDALFYAgnwDARDAsqtwpHIAIQEKSVRGTISNRLK-----TKDQDPAKLDAAIESp---NLQT 76  Chromoba...
AAK02391              5 STPSVLAFERNLDISDAIFAQk--DSKNDkdapvPLRIREKSVRGTISNRLKn----TITNDPAKLDAETEKa---NLQR 75  Pasteure...
CAG69250              6 KLPGSLSLQRGTVVSDGAFFNlfeDGKQE-----PLHVMYHGIRGTQNVAGNkekgaATGNSLAREVTNIQLtesaKLQP 80  Acinetob...
BAC62732              2 KLPNGLSYMKSIEASDVIFLVnwpDGRKT-----PLPYTSRVALGMKEGSKSaykydGQIDADVTAYSLAQG----NPHE 72  Vibrio p...
NP_669043             7 KTASVLAFERKLSNSDAMMYAgnwGQTDNw---qPIIIKEKAVRGTISNRLKn----ALASDPAKLDAEIQKa---NLQR 76  Yersinia...

lhbprmlnih:CBU_0159  95 VDACALDQNQDTLKLCFTLKVLGGITNPSACNNALFKQSYKAAAKIYIDTHGFTELATRYAENLANARFLWRNRFGAERI 174 Coxiella...
AAQ59426             77 VDVAALPHDADTLKASFTLRVLAGAGAPSACNSAAYRAKLLVTVSAYARDIGFGELARRYAHNLANGRFLWRNRVGAEQV 156 Chromoba...
AAK02391             76 VDVATLDDDKDTLVATFSIKVLPFTGRPNVCNDQDYQHQVMTTVAQYLSEQGMDELAKRYATNIANARWLWRNRMGAEKI 155 Pasteure...
CAG69250             81 NAKLLVKWDFRFIDLSYVLFASASKAGADKTEEYNFRQAFLNFVNRAKESDGLKEVVRRYVRNIVNGRWLWRNRIVAESI 160 Acinetob...
BAC62732             73 IDFCCVPYGAESIECEFSVSFASSLRKPFKCSDPEVKRTLVQLIKLYEEKVGWEELANRFLENICNGRWLWRNNECTYST 152 Vibrio p...
NP_669043            77 VDVAALPFDTDTLKMSFTLRVLGNLATPSVCNDQEYQAELASVINGYISEQSFSVLAARYAENLANGRFLWRNRVGAEDI 156 Yersinia...

lhbprmlnih:CBU_0159 175 EVRVNasn-ktVSQKWAFDATKFNLHTFD---SSDTSVKELGALIANALSSEDdYLLLDVNCYVQVGSS-QEVYPSEELV 249 Coxiella...
AAQ59426            157 EVRIQrladgqEQAGWTFDAQALRLRDFAasgQAASDLDAVAKLIAAGLNGEQ-HVLLRVTAFVRIGAG-QEVFPSQELI 234 Chromoba...
AAK02391            156 KIEVTc----gENTIHFDDAKQFSLNHFD---HQDDKIHQIAKEIKQGLLGEK-FVILYVTAYANMGYG-QEVYPSQELV 226 Pasteure...
CAG69250            161 TIQVTaq---dYPETFSFDALSYNLKSFA---EPSEQEQKLAGILLKGITGEStNAALHIEAIVDFGMGgVEVFPSQNYL 234 Acinetob...
BAC62732            153 SIGIKpwpwedEKAISPFHDIRKNYAGTNh-fRDHKDWDNLIKLITDAFSQPNgLCIFEVSATFRLGTN-APIYPSQVFK 230 Vibrio p...
NP_669043           157 KVCITs-----QTKSYQFDSNEFSLRQFS---QPSKELTALAQEIEQGLAGNG-FAFFTVDAFVRLGNG-QEVFPSQELV 226 Yersinia...

lhbprmlnih:CBU_0159 250 LDKSssd------kkGKKTKILYAVNDi----AAMHSQKIGNAIRTIDTWYPDFTNQeqtagpIAIEPYGAVTNLGRSYR 319 Coxiella...
AAQ59426            235 LDRQr----------GDKSKTLYAVKQkdgdiAAIHSQKIGNAIRTIDTWYPEADDNg----pIAIEPYGSVTTQGKAYR 300 Chromoba...
AAK02391            227 LDNSt---------nNRKSKILYEINQk----AGMHSQKVGNAIRTIDTWYAEEVAFp-----IAAEPYGAVTTLGTAFR 288 Pasteure...
CAG69250            235 EDKPkgfsrslyqltPKKPDHKANDNQyl-gqAALRDQKIGNALRTIDTWYPSFKENde--kpIAIEPNGANLEGQIFYR 311 Acinetob...
BAC62732            231 DSVK-----------GEKNRIYQSTDVdgessPILGCYKTGAAIATIDDWYPDADKP------IRISHYGAHREDVYCYR 293 Vibrio p...
NP_669043           227 LDSN-----------SKKSKVLYQIDGi----AALHSQKVGNALRTIDDWYPDATELal--gpIAVEPYGSVTSRGKAYR 289 Yersinia...

lhbprmlnih:CBU_0159 320 TPKDKQ-DFYTFFDAWARGeq---lARVEDE-----HYVMAVLVRGGVFGKSD 363 Coxiella burnetii RSA 493
AAQ59426            301 QPKQKQ-DFYNLLDNWVLKde---aPPLEQQ-----HFVIATLIRGGVFGEAG 344 Chromobacterium violaceum ATCC 12472
AAK02391            289 QPKTKKnDFYTLFDNWLLKge---vPPVEQQ-----HYVMSVLIRGGVFGASG 333 Pasteurella multocida subsp. multoc...
CAG69250            312 VGKDKVsAFDILKEIDELD------PSSEKG-----MFLISCLIRGGVYSEGE 353 Acinetobacter sp. ADP1
BAC62732            294 HPNTGKdLFTLLEKADQYLeqlqatDVLPDEmindlHFIVANLIKGGLLQQKG 346 Vibrio parahaemolyticus RIMD 2210633
NP_669043           290 QPKQKM-DFYTLLDNWVTKgt---vPAVEQQ-----HYVMATLIRGGVFGEKG 333 Yersinia pestis KIM
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