Conserved Protein Domain Family
Csy1_I-F
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cd09675: Csy1_I-F 
CRISPR/Cas system-associated protein Csy1
CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Large proteins; Predicted subunit of the Cascade complex; signature gene for I-F subtype; also known as Csy1 family
Links
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Statistics
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PSSM-Id: 187806
Aligned: 5 rows
Threshold Bit Score: 571.771
Created: 5-Feb-2010
Updated: 2-Oct-2020
Structure
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Aligned Rows:
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PubMed ReferencesClick to see Conserved Features Help
Sequence Alignment
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Format: Row Display: Color Bits: Type Selection: 
AAK02389      50 HYYQYDICMSDfAIRMTAQLTFGTHISKGIHPDSRGNNVKfqa-tfIYNEYVGSHCLKTLELDANGDASALPLVALFDYI 128 Pasteurella mul...
CAG76579      56 QKHEVRNWLTD-AASRAGQISLVTHALKFTHSDAKGSSVFnae-tvEDATTLSTATLAQPAIDAVGNAAALDVAKLLQTE 133 Pectobacterium ...
AAQ59428      42 AQYRPQAWLAD-AARRAGQLQLVTHPVKASHPDARGSSLFvtpeslPPRPEAGSHHLASAASDVVGNAAALDVYKFLKLE 120 Chromobacterium...
NP_669041     58 ARYEVRNWLTD-AANRAGQIKLATHAPKYTHSDSKSSGILnielqsKKKDYFSSVDLAEQASDVIGNAAVFDLVKLLQSE 136 Yersinia pestis...
YP_001209096  38 KKYRPDIWLQD-AQKKAERFKVGTHISKGIHSQSQGDNVYfs--qkVDHDYVNTKTVTNNYLDGGGAASDFPLASFFEWE 114 Dichelobacter n...

AAK02389     129 IDDENeltLRELLLADDPRLVGCFADDLELSEQYKKRFQDVLTgeVRELATYELNKQLFWVNSVssi------endDYIC 202 Pasteurella mul...
CAG76579     134 HDGDS---LVAALQRGDNRALEALAENPEQLAQWLTGFQQVFT--NRQPSSHKLAKQIYFPLANg-----------EYHL 197 Pectobacterium ...
AAQ59428     121 HEGHT---LLALLRAGDPDLLAALSDDAEQAAAWRDAFCAIAEp-SGGPASHTRAKQIYWPVPPesglpanphddsHYHL 196 Chromobacterium...
NP_669041    137 CEGGS---LIKCLEQGDNSVLKLFSNDDELVEEWTTKFKSILN--NEKFTSHKLAKQFYFPVGPd-----------QYHL 200 Yersinia pestis...
YP_001209096 115 VITGSgikMRDVIWENGAAVQRCFADDPELSQTYQQTFLTCLQaqPQNPQTDALNKQLLWALPQtdd------nrdNYLV 188 Dichelobacter n...

AAK02389     203 LIPLYPSALTHTFYQKIVQTrysekNKNASTKRYKKVSgQEHYCSINDLGIVSLGGSNSQNVSQLNSSQKGRHYLLPSLP 282 Pasteurella mul...
CAG76579     198 LSPLYSSSLAHALHQRISAVrfgdeAKAIRQAQRTNQWhDQLSISYPNLAVQNMGGTKPQNISALNSSRSGRSYLLSSAP 277 Pectobacterium ...
AAQ59428     197 LAPLYSSSLSHWLYQRIQRDrfgeeAKAARQARRDRVDhPRGYSDYPLLAEEKKGGTKPQNISQLNSERKGSSYLLASLP 276 Chromobacterium...
NP_669041    201 LSPLFSSSLAQAMHQRIIEArfsdqSKEAKAAHKAGRWhPTVRVLYLDTAVQHIGGTKPQNISYLNSVRGGKVWLLPCGA 280 Yersinia pestis...
YP_001209096 189 LVPLHPSVLTHEFYHKIEAI-----NNNRFDVKSKSVP-QKRYADLLDLAQIKLGGSKPQNISVLTSKQRGINYLLPSLP 262 Dichelobacter n...

AAK02389     283 PRCKT---HKIKPINLLSNTIFNNDLAYICQGGLDKLYSVVKAQKN--------VYTVRDNRSKALNMILESILDIVSEL 351 Pasteurella mul...
CAG76579     278 PQWNSiekPPQQHESIFRPRGEVDYHTRATLAQMQRFLLSVKDVEN--------NRDIRQQRLHYLDQLIDQLFFYVASV 349 Pectobacterium ...
AAQ59428     277 PLWDNsdlRPLYRLDSVFSRFGRRKTVRETIRELKQWLAKLNPEATppdqakpgNRHVRNRRDAYLEQIFEELLQFGAAY 356 Chromobacterium...
NP_669041    281 PSWKNiqkPPIKYRSIFHDRSEFTVLARNNLWQMQLYLLGVKPLSN--------TMDIRAARLACCDEIIDILFNYVAEI 352 Yersinia pestis...
YP_001209096 263 PVFRAr--QDIHFSPKLESIFFSKSLYYRVEDDLKILFGVIYCKEN--------NYEIRNMRKAAVHRIAHQILSIGETI 332 Dichelobacter n...

AAK02389     352 QKQp--AGWS--KDSQLEMCEKYWLDPKRVHLpdEEAFRAEYEKGEWVAEVERRFALWLNKRLQKrfphIAKDFDDVEYH 427 Pasteurella mul...
CAG76579     350 QNLp--VGWS--AESELKRAQQLWLDPYRAET--DTVFRREREAGDWQQAVAYEFGRWLNRRLKH----ENLIFGEVERR 419 Pectobacterium ...
AAQ59428     357 ANQl-pRGWTadSECRLPLEEQCWLDPRRADS--DEDFNRHFQFQDWPRQLTESFARWLNGQLGG----DRLQLAEAEFH 429 Chromobacterium...
NP_669041    353 QNLdgtNGWSdaEDCKLKRSEQLWLDPTRAMD--DPVFKLEREKEDWKQEVSQDFGYWLNRWLQH----DELVFGYVEQR 426 Yersinia pestis...
YP_001209096 333 CALr-pAGWS--KDYDLSSAQKYWLDPKRADLagEEKFKAERDAADWDKAIEKDFANWLQKVLEErfkkHRHEFTDIEHY 409 Dichelobacter n...

AAK02389     428 EWRrnIRRTLRYR 440 Pasteurella multocida subsp. multocida str. Pm70
CAG76579     420 EWStaALFKRRMR 432 Pectobacterium atrosepticum SCRI1043
AAQ59428     430 HWRreLAHDIDWQ 442 Chromobacterium violaceum ATCC 12472
NP_669041    427 EWS--SLFKQRLR 437 Yersinia pestis KIM
YP_001209096 410 EWQreMKAVIKES 422 Dichelobacter nodosus VCS1703A
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