Conserved Protein Domain Family
Cas6_I-F
?
cd09674: Cas6_I-F 
CRISPR/Cas system-associated RAMP superfamily protein Cas6f
CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas6f is an endoribonuclease that generates crRNA; This family is specific for CRISPR/Cas system I-F subtype; Possesses RRM fold; also known as Csy4 family
Links
?
Statistics
?
PSSM-Id: 187805
Aligned: 6 rows
Threshold Bit Score: 250.419
Created: 5-Feb-2010
Updated: 2-Oct-2020
Structure
?
Aligned Rows:
Download Cn3D
PubMed ReferencesClick to see Conserved Features Help
Sequence Alignment
?
Format: Row Display: Color Bits: Type Selection: 
AAQ59425              1 MDHYLDIRLLPDADFgppVLMNALYAKLHRALaaq----qrqDIGVSFPGYdpapsshdgkplpPTLGLTLRLHGSAa-A 75  Chromoba...
lhbprmlnih:CBU_0158   1 MNYYFDINLLSDAEIpstVLMNAVCKKLHKLLcdl----dstRIGISFPKYk------------ITLGNVLRLHGTEf-D 63  Coxiella...
AAK02392              2 TTHYIELKAIPQMDMlqsEVIGHCMQILHQFLphf-----egRVGVAFPAYgl----------gRTLGGIVRLFANQe-D 65  Pasteure...
BAC62733              2 DWHYRTITFLPEYRNn-eAIAAKCIKELHRFNyky----etrSIGVSFPLWg-----------qETVGRKITFVSTNkmE 65  Vibrio p...
NP_669044             1 MDHYLDIRVLPDPEFsaqTLLEALFAKLHRALvat----ipgRVGVSFPTAg------------KTLGSQLRLHGSRg-D 63  Yersinia...
YP_001209099          1 MNFYQEITLLPDAEVslyFLWSKVYGQLHIALadvrnrygidTIGVNFPHYvyeeqn--hkvvaARLGDQLRIFALAenD 78  Dichelob...

AAQ59425             76 LDGLMARRWLSGFA--DHAIVGDIRPVPAGASA-----VSVRRRQAKSSPARARDRLMRRQGISAEEARRRIPDETAQRL 148 Chromoba...
lhbprmlnih:CBU_0158  64 LQKLHEVSWLGGMN--GYCKISEVATVPVNTKH-----RTVYRKQPTMSQSKLKRLLKRGTITNDEVKSYKAKMVAEKGL 136 Coxiella...
AAK02392             66 CNQLHQQLLRSGLS--DYALISEVSKTPLPTEHr----SYSRVHRKGQSAIRRTEKRLKSQGRWDESIRADMQQRQQNVA 139 Pasteure...
BAC62733             66 LDFLISRRYFVQMTklGYFSISTTQTVPDDCSYvlfkrAHSIDKGTFAGRARELKRLERRALERGEIFDPIAYSKTTSHA 145 Vibrio p...
NP_669044            64 LLELQSAGWLKGLQ--DYCECSEILPVPADVKH-----RTIRRVQVKSSAQRLRRRSVSKGWLTEEQARLRIPDSHDKRC 136 Yersinia...
YP_001209099         79 LEKLQINQWLERLS--DYVHIKRISKIEPNKVTg----YVVVKRYRYPSLDKVALRFAQFRKINFEEARKHCTKYKHQAK 152 Dichelob...

AAQ59425            149 NLPYLTVD-SASTGQCFRLFVEQqa-apSIAAGSFNAYGLSAA----AALPAW 195 Chromobacterium violaceum ATCC 12472
lhbprmlnih:CBU_0158 137 NNPYLDLV-SGTNCQRHRRYIVLgelldEPVEGGFDQFGLSKT----VTVPWF 184 Coxiella burnetii RSA 493
AAK02392            140 FFPHCHLK-SASTGQRFILAVKEnr-mpQSCVGVFNAYGLSNS----ATVPHF 186 Pasteurella multocida subsp. multoc...
BAC62733            146 FQSYHSLEeDSSSGNKFRLNIQMkersgTVGTGKFSSYGLGNTdnslQVVPLI 198 Vibrio parahaemolyticus RIMD 2210633
NP_669044           137 DLPFLRLK-SRSSEQYFLLFIEQgtlqaSATTGEFSAYGLSVN----ATIPWF 184 Yersinia pestis KIM
YP_001209099        153 NYPFIMLK-SQSNQEYYKLSIRQen-aqESVSGRFNVYGINSAtg-iVTVPNW 202 Dichelobacter nodosus VCS1703A
| Disclaimer | Privacy statement | Accessibility |
NCBI Home NCBI Search NCBI SiteMap