Conserved Protein Domain Family
Cas3_Cas2_I-F

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cd09673: Cas3_Cas2_I-F 
CRISPR/Cas system-associated protein Cas3/Cas2
CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas3/Cas2 fusion; This protein includes both DEAH and HD motifs for helicase and N-terminal domain corresponding to Cas2 RNAse; signature gene for Type I and subtype I-F
Statistics
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PSSM-Id: 187804
Aligned: 4 rows
Threshold Bit Score: 1658.46
Created: 5-Feb-2010
Updated: 2-Oct-2020
Structure
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Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
AAK02396     1 MNILLVSQCQKNALTETRRILDQFAERCGDRVWQTAITQAGLETLYKMLRQTARKNTAVACYWTHRKNSAELLWIVGDRR 80   Pasteurella mult...
AAQ59429     1 MNILLISQCDKRALTETRRILDQFAERRGDRVWQTPITQAGLDTLRRLLRKTARKNTSVACHWIRGRDHSELLWIVGDAR 80   Chromobacterium ...
CAG69246     1 MHVIIISACEKRALKKTRAILDSYAIRTGHSSWQAPMTIEGLKEIRSALKKVATRQTAVAAYINFGMRRMKLAWVVGAKH 80   Acinetobacter sp...
NP_669040    1 MNILLISQCHKRALNETRRILDQFAERKGDRTWQTAITQEGLNTLRKLLRRTARRNSAVACHWIKSNNQSELLWIVGNLR 80   Yersinia pestis KIM
AAK02396    81 QFNDQGRVPTNRTQRnILRAEEEMAWQDAYslQILTALSALLHDVGKSSVGFQAKLDKtkNAPRvADSYRHEWISARLFE 160  Pasteurella mult...
AAQ59429    81 RFNLQGAVPTNATQRdVLRADDENDWLSGEdiRLISGLAALLHDLGKACSAFQVRLRP--NGPAgANLYRHEWVSLRLFQ 158  Chromobacterium ...
CAG69246    81 KFAHDGAYPVASIKK-QQKLLMLDEWVKAS--SLLAGAAGDMHDIGKASQHFQNKLSPemAGQKiRDDIRHEWLSLKLLQ 157  Acinetobacter sp...
NP_669040   81 RFNAEGTVPTNTTQRdILRSQDENNWHSVEtiALLAGIAGLFHDFGKANVLFQQGLQG--QGKT-YQPYRHEWVSLRLFQ 157  Yersinia pestis KIM
AAK02396   161 AMIEgcqtdQAWLERLANWQVFEETnpTWFSKIIQDRPNEnhfsd------faylpPLARRVIWLITSHHRLPFTHDisr 234  Pasteurella mult...
AAQ59429   159 AFVGdd-ddAGWLSRLQDPAKIDGAswIKRLKARKLRDGLdadarhakpfapgalpPLAAALCWLVLSHHRLPQQAG--- 234  Chromobacterium ...
CAG69246   158 QLRK-----NGWNWQLAWKNLDKGLd-KFTLGDRQEIEQGiq-------------nELEAVDYLVVTHHGLLGVEEAlkn 218  Acinetobacter sp...
NP_669040  158 AFVEqk-ndIQWLTALSQINPADETt-LMSNLVKDGLDDYtnpl--------aalpPLAKTIAWLILSHHRLPVYPSk-- 225  Yersinia pestis KIM
AAK02396   235 SQDCIKNLRKYAkltfeSLFKAYkpavgwvsngtehptpqafwqfqrVATQSQAWQKHMARWAKKALNHPALFSVSENAD 314  Pasteurella mult...
AAQ59429   235 DITALRMQSGLA-----ELDAGWnqplseagrre---ietywtfpygLPCDDALWRDRTAALANELLKRQPGQPAPWLDN 306  Chromobacterium ...
CAG69246   219 DPLALPHYENHVrtlvpSREQISc----------------------aGELPDSIFKSHQKRMQRLTALIPKQKTDQLLYW 276  Acinetobacter sp...
NP_669040  226 DYHRPPKVEEIDdwlhqQLMPVWnstnmdsgdwrekdkldvwrfphgTPLQSAEWCKKAQKFAKRALRQPSLVNDGHLNQ 305  Yersinia pestis KIM
AAK02396   315 PFLLLLARLCLMTGDHYYSAQDQNEKLGElNFPLLANTYRENHQ---------PKQCLDEHLIGVCQTAVRFAR-LLPKF 384  Pasteurella mult...
AAQ59429   307 AYLMHISRLLLMLADHHFSSQTVKQRWQReDEDRIAFANTLKNDpq-----rrFNQTLPEHLTGVARHALAAAR-ALPGL 380  Chromobacterium ...
CAG69246   277 KALALHSRAALIHADHIVSAQQYSLQKPE-NVALFANTKLKNIDqdkk--aklQDQPLEWHLHQVGDRASRIAVqMMTDL 353  Acinetobacter sp...
NP_669040  306 RFTSHMARLVLMLADHHYSSLPATPGWQDkNYQVFANTHNKMRDanahsktieMKQRLDEHNIGVGQNALLLGR-SLPHI 384  Yersinia pestis KIM
AAK02396   385 PRELPRIKQHKPFVQ-LAKDRFAWQNKAVNVARLLQQTSESQGFFGVNMASTGCGKTLANAKMMYALNDSKQgaRFTIAL 463  Pasteurella mult...
AAQ59429   381 ARELPALGMHKALRQrSADPRFRWQDKAFDLAAGIRDKAAAHGAFIVNLASTGCGKTLANARLLYALANPAAglRCAYAL 460  Chromobacterium ...
CAG69246   354 SLSGLSEQTVEYICQpTTHPRFQWQNIAANALQKNIQKHPETPALVFNIAGTGSGKTRMNLRAACTLRPDDP--RIAIAL 431  Acinetobacter sp...
NP_669040  385 RKTLPAITRHKGFKQrSVQEKYRWQDKAFDLAVTLRERSLQQGFFGVNMASTGCGKTFANARIMYGLSDEKQgcRFSVAL 464  Yersinia pestis KIM
AAK02396   464 GLRVLTLQTGSALKKRLHLSDQNLAVLVGGSAVKKLYALQQEKQNQlaqQGSESAEDWLEDMQvegATYIESAVENEaIL 543  Pasteurella mult...
AAQ59429   461 GLRALTLQTGLALRDRLRLDDGDLAIRVGGAASRELFEHYANAAEQ---SGSESSQALLDEDS---HIRFDGNPDHP-LL 533  Chromobacterium ...
CAG69246   432 NLRSLTLQTGHALKTSMNLSDDEIAVIIGDTITQTLFDQSKEKIEFvdeDENRPEPIFDAWGEdcnLPDWLHPLFTIeKN 511  Acinetobacter sp...
NP_669040  465 GLRTLTLQTGTALQQKLTLQKDDLAVLIGSQSVLQLYQLNNDKLEPr-gTGSQSADKFFSEHQ---YVSYDGSLDDGrLS 540  Yersinia pestis KIM
AAK02396   544 SFLSKDDKTKKLLYAPIVSCTLDHLISASESVRGGHHIVPILRLLTSDLILDEPDDFAQEDLPALSRLVYLAGLFGSRVL 623  Pasteurella mult...
AAQ59429   534 QKLSHDPRFNALLAAPVLVCTVDHLTPATESARGGRQIAPMLRLMSSDIVLDEIDDYSMEDLPALTRLVHWAGLLGSRVL 613  Chromobacterium ...
CAG69246   512 GRKVLDQKETTILASPLLVSTIDYLIAAGEPHQQGHHVKALLRIMSSDLILDEVDGYEPKALIAVLRLVQLAALYGRNVI 591  Acinetobacter sp...
NP_669040  541 TWLSNNDRLKRLLCAPVLVCTIDHLIPATESLRGGKQIAPMLRLLTSDLVLDEPDDFDRNDLPALCRLVNWAGMLGSRVL 620  Yersinia pestis KIM
AAK02396   624 LSSATLTPDFITGLFKAYQAGRKIYNQQKG-IVAALPICCAWVDEFQQVQANCGQDEQFIQQHDEFVRKRAENLAKSPVR 702  Pasteurella mult...
AAQ59429   614 LSSATLPPALVSCLFDAYLAGRRHYQANRGqPGLPLNVCCLWVDENDARAADCAEAAAFAAAHLDFARPRAQWLAKQPPR 693  Chromobacterium ...
CAG69246   592 CSSATLSLTVAKTIHRAFESGIQMRAALYGnEKKSIIAIIDNELKPQVWLERSNQKSEFDTRYQNHLDDLQVQLLSKPTH 671  Acinetobacter sp...
NP_669040  621 LSSATLPPALVQALFNAYRAGRADYQQASGqPDTPVNICCAWFDEHGVAQQDIQQSKDFIQHHGDFITRRVGKLSTAEVL 700  Yersinia pestis KIM
AAK02396   703 RQAEILSLPSLkpregeelHYGLLADTLLQKAIALHDLHGQTDPHSqKKVSVGLIRFSNIEPMIPLAKALFGLQASEKfa 782  Pasteurella mult...
AAQ59429   694 RAAELLPLSGLprhg-nasFYPALAERLREGALRLHRLNAETDPASgKRVSVGLIRIANIDKLYQLAQSFYALGRLDGvq 772  Chromobacterium ...
CAG69246   672 RLAQLLSLSET--------TVLSWKQSVLEGVKQLHQAHAWSFRKTeKKISLGLIRVANIKHAIRLAQFLSDHLPEAK-- 741  Acinetobacter sp...
NP_669040  701 RRAELIPVSSAsvk--ngsVLDAMAAVMRDSMLRLHQAHHQTHPSE-KTVSVGVVRMANIDPLVAIAQRLYAMAAPENyr 777  Yersinia pestis KIM
AAK02396   783 dyqvhLCCYHSRQLLLLRSYLEEKLDKILDRHTP--------EQLFQHEEIALPMSQYKAKNHLFIVLGSPVTEVGRDHD 854  Pasteurella mult...
AAQ59429   773 ---ihLCVYHAQYPLLLRSAIERRLDAALSRHDR--------QALFRLPDIRQRLDANPAADQLFIALSSPVSEVGRDHC 841  Chromobacterium ...
CAG69246   742 -----IACYHANDWLISRFYKEQRLDQLLTRHKDgkkrktgnEQIEQDDEMIDLMQNSDSLNVPFIVIATPVEEVGRDHD 816  Acinetobacter sp...
NP_669040  778 ---ihYCVYHSQHPLAVRSAIERRLDVTLTRYQP--------NALWQVAEIEHALQHHPEQHHLFVVLATSVVEVGRDHD 846  Yersinia pestis KIM
AAK02396   855 YDWAIVDPSSMRSIIQLAGRVWRHRAEKVAeQPNIALLPINWRGLKVry--------qQKDVIYHRPGFESHQ-HKLATH 925  Pasteurella mult...
AAQ59429   842 YSWAIAEPSSMRSLIQLTGRVRRHWTEPYA-PLNLLILQQNIKSWLE-----------PDKAAYLRPGFETEReYRLDSH 909  Chromobacterium ...
CAG69246   817 FDWAIIDASSVQSIVQTAGRVNRHRLEKVQ-QPNIVIPEWNYRYCERrdiekrkqqskQRRPVFIYPGYEGYGvSATSTY 895  Acinetobacter sp...
NP_669040  847 YDWALAEPSSMRSFIQLAGRVQRHRQVAPQ-MANMHILQKNFKALTQk---------dPAIPVYCKPGFETTR-CRLNTH 915  Yersinia pestis KIM
AAK02396   926 KLDQLISQRDLAHIQATPRIVKPEVLQASTQLADLEHHAIASLLNH-----PSENLVNLYWDPRYCNYLLANLPLMSEFR 1000 Pasteurella mult...
AAQ59429   910 DLAQLLREDEYRHPDARPRLLPSAALQPKTRLADLEHVRLNAELNGdrpqdAQARLCAASCWQIKHAMLHAGLLRRQPFR 989  Chromobacterium ...
CAG69246   896 SSQRLNELLPWDHQSQLVINARLRFDQVGCLFAKLDDEQIKDFCKNy---fNDQGEQLFSRSDVDASIMTENIYNITPLR 972  Acinetobacter sp...
NP_669040  916 DLDKLLLPSQYKVINAISRIQERTKLEPRDNFVDLEHLSLRLILQGs----AEPLKYYAALWWRKQATWSGEQQRCTPFR 991  Yersinia pestis KIM
AAK02396  1001 KSMAELE---VVCVPDDDSHWGFGFYRAQKRDEETLSAlpe---iqYEPIQQDKHAVVQPWLVASLDTVLSDLAEQLNVV 1074 Pasteurella mult...
AAQ59429   990 DSQNREEremMLLPNEEEDDFNLVWLAEGDKRYQKNERpsdylmhrISDEALFRADGISPWSNESYLNELERLAAELELP 1069 Chromobacterium ...
CAG69246   973 ERNYQETymfEWAESLIVKKQVYGFDEKATKNLKYRKYgl-----vWEQVKFEEIPAKSQAWLALTPQQMKDYCYEYQIA 1047 Acinetobacter sp...
NP_669040  992 QSSPDEQh--NLWIDDEADKPVFKRLDSDQIEWKVSDG--------FQDVELTLAAGNSAWIDTDCLRIYQWLAESLNKE 1061 Yersinia pestis KIM
AAK02396  1075 SPEWIAptylCASLPq-YDGQLDWHYNEVYGFW 1106 Pasteurella multocida subsp. multocida str. Pm70
AAQ59429  1070 LADCARrf-gCVSLPfdQNHHQGWRFHPALGFC 1101 Chromobacterium violaceum ATCC 12472
CAG69246  1048 NEQGCR----ISLTPynRDEVPTWSYDYGFGVF 1076 Acinetobacter sp. ADP1
NP_669040 1062 LNEVSRqf-gEVRLP--KKDGERWHYHPLLGVF 1091 Yersinia pestis KIM
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