Conserved Protein Domain Family
Csx1_III-U

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cd09671: Csx1_III-U 
CRISPR/Cas system-associated protein Csx1
CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Protein of this family often fused to HTH domain; Some proteins could have an additional fusion with RecB-family nuclease domain; Core domain appears to have a Rossmann-like fold; loosely associated with CRISPR/Cas systems; also known as DxTHG family
Statistics
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PSSM-Id: 187802
Aligned: 15 rows
Threshold Bit Score: 187.706
Created: 5-Feb-2010
Updated: 2-Oct-2020
Structure
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Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
BAB59255       4 IFISLWGNPERWNVtrysf-------------nsktcESITSSRVIYENFKtdyci--iyipNSIYPGIYKDDTYlsqyq 68  Thermoplasma vo...
AAT42642      26 VLLALWGDPLGWKRvkysm-------------nnekyLSITSSSVISRNKNidksf--ifipDSIFPELLNSVDNlkd-- 88  Picrophilus tor...
YP_002534243   8 VTFLGVGNYRESLVkisp---------------dfcvRQKVFPLAIVDYLHhlg------ksVEVLFFLTEESRQse--- 63  Thermotoga neap...
YP_002841085   3 ILFAPIGDPSGYVSveylvn------------gkgpyNTNASFIAISQALKid--------kLVVYAGLSLCDTNcndyk 62  Sulfolobus isla...
YP_001244688   8 VTFLGLGKYEESEIkingnlldgcv-kndgsqdifcvRQSIFPLALIEYLNhig------kqVETIFFLTKTVKEsktw- 79  Thermotoga petr...
Q59068        45 VLIEKLKVDKVIVVg----------------------TAKSMWEKLYEYYAkevgefdeeywIEIGKKVGMSKYDnyals 102 Methanocaldococ...
CAD84026      39 LALAGYLRPERLILv---------------------gTAGSMWDVFFEQQDasd-----ddvLALIDAVRESRVDadml- 91  Nitrosomonas eu...
NP_342836      4 IVFSTIGNPKGYQKvtyei-------------dgekfESNVSVLALRDLLKvd--------kTVVILGISVADVYncky- 61  Sulfolobus solf...
AAL62574     208 SVITAAGGGRGKRV-----------------------NPHAVAAAKKAGLRv----------NEVGEEVSVEPPQcegw- 253 Pyrobaculum aer...
NP_213260      4 VVIAPWGDPTNWQRvkysyndhedkypsatgiiikaeKPDSVILVCPDSLAekrip-ykeikIQCSGNLSDKTQGnlpfe 82  Aquifex aeolicu...
BAB59255      69 ---dlinSKLCEFLNSkdtesaefyknsnkiifpskgsftadnknyIFDFDINYiy-sYFYRSILNYLEsvd---kiNKI 141 Thermoplasma vo...
AAT42642      89 ----cfkSKLIDHIKNydtesadfinksdvn-ifpsmgsyykdklyRYDVDIKFly-sYFYVSILKSIEffn---diDTF 159 Picrophilus tor...
YP_002534243  64 -----twLECRNYLENknvsyk------------------ffsipeRVSSEVVMn---SLVRTLVENLKe------dENI 111 Thermotoga neap...
YP_002841085  63 cckdsvtQKVAQKLGNefdlliapn-------------iygtrfiqKDRKNTLYf--nFIYFNSLKILEdn----kpDEI 123 Sulfolobus isla...
YP_001244688  80 ---decrRFLRSNIKDfei------------------------pggESSSNLMN----FLVRNLVENLEk------gDRV 122 Thermotoga petr...
Q59068       103 ---eedlKKIEKVIDKylkkinpnav----------ggskckiikyGIDKDEIWen-fDLFMSLINEVNd------gDEI 162 Methanocaldococ...
CAD84026      92 ---saqeKRLTKRLGLpvic-----------------------rliPYARDAAEq--tEVLLTLAKLVHr------sEEV 137 Nitrosomonas eu...
NP_342836     62 ----adyRSCKECIIQnskndlgises--------yvvapnvyqkfKGKPDHYFt---YIYYHSLRILEke----giNEV 122 Sulfolobus solf...
AAL62574     254 ---rayaRRYVEELARvigieaavvvt--------aalgrlgrrvfKGNPDIMLs---ELLWGLWQAVKglgapkgqLTI 319 Pyrobaculum aer...
NP_213260     83 n-yeeikSKVENKIKDffskninfhkkpdvi-isysfgsyntlefeGQAEDFFAgvlkGLVYKFTEYLEkgi--pekIEI 158 Aquifex aeolicu...
BAB59255     142 IVDITHGINFLEFIFLESLMYALRVYALsn-kiDVNIEYYNSDPYsnfailniykiks----------------ieieyk 204 Thermoplasma vo...
AAT42642     160 LIDTTHGVNFMQLIFTESVRHACNTYSLny-rrNIKLEFYNSDPYyksddtilnintikidlid---sknilsvisrdfl 235 Picrophilus tor...
YP_002534243 112 ILDITHSFRSFPLMAGVVALYLKEAKRI-----DVRVIYGKFDPEtnttecedltpltratewi---yavrlfreygyak 183 Thermotoga neap...
YP_002841085 124 YIDITHGINYMPLLATDAIRLATYTYIVennknGVNLTIYNSEPVtkgnqgpyaiddiysekitvrqalssilspflsse 203 Sulfolobus isla...
YP_001244688 123 ILDVTHSFRSIPLMASVVALYLKEAKDVn---vSVVYGKYNKETKvtecedltpltkatswiy-----avrlfkeygyak 194 Thermotoga petr...
Q59068       163 YLDITHSFRSIPLFMYVMLEFMRYFKNV-----KLKGIYYGMLDVirelghapvvdlspifeisewirgmyefttygnsy 237 Methanocaldococ...
CAD84026     138 FLDVTHGFRHLPMLALVAARYLAHVKDV-----KVRGLYYGALEMtstngetpvlqldgm-----------lqmldwves 201 Nitrosomonas eu...
NP_342836    123 FIDTTHGINYMGVLAKEAIQLAVSAYAAks-ekEVKVSLYNSDPVgkdvsdtvklheieai----------kisplsglk 191 Sulfolobus solf...
AAL62574     320 LLDVTHGINFMPTAALWAARLVASIALAag-ydKVVLQAYNSTPYewhyvkvfseeithiqf--------pqlpkspaar 390 Pyrobaculum aer...
NP_213260    159 ILDVSHGINYTTVMTYEAVRTLAQLLAYf---tEVSLKVLNADPVigrniqkplrineie------------yyssifpn 223 Aquifex aeolicu...
BAB59255     205 nvlsiiSRDFINMYRHNKKDikdyfklnfn---edlsdyikacSIMAQSVTVPYLMYLIiniyk------kiyeIGSGGL 275 Thermoplasma vo...
AAT42642     236 nkykdnKNSIKNYFKKINRDgleiy--------------ikacSIMVQSDIIPYLLYVIdnkhq------cfniDQENNF 295 Picrophilus tor...
YP_002534243 184 elahliRKRNEEIHRKNSSKkprilnslsss-lqnisfslrigSIKAIRKNLSNFFEFFdgkrnqirsevkefvPEIAAL 262 Thermotoga neap...
YP_002841085 204 sknvikNKVFKVIRNKANSE-----------------------NVNTSSCNADFIYYIVnalsag---iflyliLKKNEI 257 Sulfolobus isla...
YP_001244688 195 eladliKKRNEEIYRGSQSSkkpkllgsmsqklqdlsssirlgSIVAIRKNLTNFFNFIdrnkarireetevfvPEIAAL 274 Thermotoga petr...
Q59068       238 liskllENEDKEIAEKLQKIsryi----------------danYLKELREEVKTLKPLLnekkdtg-rflkyfiPELHKF 300 Methanocaldococ...
CAD84026     202 latynkDGDYGVFASLLQQDglpegkakql---traayferssNPVKARETLGSVFSAIkthng------pmgvLFRDAL 272 Nitrosomonas eu...
NP_342836    192 yvtyqiLNKDKNFFNKIFSD-----------------------SVNAIPRFATALDNGLfiyls-----ekdssLHLKRL 243 Sulfolobus solf...
AAL62574     391 alyygaPLHYALLCREIPWPsppaveprcq----ggeihypplGVKPLQLYEELLTAAGc-------------pPRTPTL 453 Pyrobaculum aer...
NP_213260    224 lvvyriKKEDKECEQILEAYddsineigd-----nmklerehiFLSAIIHGTPLYILTYm--------------PSSKDL 284 Aquifex aeolicu...
BAB59255     276 EVHLNIednkir---qtfdnkINVNIETLAFLdtlikinssikydngfkiPDIYTFTDNFFsresy--------nifiKN 344 Thermoplasma vo...
AAT42642     296 SITIKNdgnlinv-qqdfpdsIKINIESLAFIdslravynsmkshnkyniKDIYDLTDIFFgrdsd--------itflKN 366 Picrophilus tor...
YP_002534243 263 LDVLEKsyrvfhi-ergglklNEEELESERKLlnfylqtg---dlgmalrLAREYLINAYLmmsgeet----nflerdVR 334 Thermotoga neap...
YP_002841085 258 NSCLNVvenilgk-ldfnnfaVQLNFENGKVIydeni---------pieiSYIHSLLKVSNhiaq---------gsnkIS 318 Sulfolobus isla...
YP_001244688 275 LDGIEKryrvihv-ksenfelSEKELESEKELldfylqtg---dlgmalrLAREYLINVYLmsggeks----dfldrnVR 346 Thermotoga petr...
Q59068       301 IDKLKYedsdfe----fqismAKWNFDNKKYSsgylclt----dsifwklCELYNLPSVYKnrevmkgiiynpslnkkYS 372 Methanocaldococ...
CAD84026     273 TERINWfkepdra--awelalADAYLERRDYV------------------RAVIYLYESFVtravl-------ehklnPN 325 Nitrosomonas eu...
NP_342836    244 EDDLSKdpllt-----pseneINVVYKDMKYAlshalfyvisrfsgnvdlDTLRHYAETYAdkvt---------raiiEN 309 Sulfolobus solf...
AAL62574     454 KELMEWr-------------lVRVLTPTARKVv----------------hHELNSVYNALRnr--------------kLE 490 Pyrobaculum aer...
NP_213260    285 KAKIDNaagyyekniiieneiGEKKIKVKRKLrf---------------tENYITMLKAYFlsfilekkgfskkeevlLE 349 Aquifex aeolicu...
BAB59255     345 ELRKIKSkkeh----------ydfDIGNFSRNFKAY 370 Thermoplasma volcanium GSS1
AAT42642     367 ELKNIKNnkmrt-------hgryiDLSEFTRNFKAH 395 Picrophilus torridus DSM 9790
YP_002534243 335 ESVNLSKlg--------------yDIILQARNHVAR 356 Thermotoga neapolitana DSM 4359
YP_002841085 319 EIRRMADnystsdsv-kyvilneiSRIEDKKNEIPN 353 Sulfolobus islandicus Y.N.15.51
YP_001244688 347 ESVSISTfg--------------yDTILQARNHVAH 368 Thermotoga petrophila RKU-1
Q59068       373 AFGSIKDmh--------------yKRLRNIRNKIAH 394 Methanocaldococcus jannaschii
CAD84026     326 DFSERDEawkdar-----qdnkqvRKLEYLRNALAH 356 Nitrosomonas europaea ATCC 19718
NP_342836    310 EVDKIEK-----------------YQMGSERKLLGE 328 Sulfolobus solfataricus P2
AAL62574     491 RCTKLAEllpya-------fedpePCVEDNRNFVAH 519 Pyrobaculum aerophilum str. IM2
NP_213260    350 DINKLNEmifrefpvlkhrisketNNINERRDNIPE 385 Aquifex aeolicus VF5
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