Conserved Protein Domain Family
Csx1_III-U

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cd09668: Csx1_III-U 
CRISPR/Cas system-associated protein Csx1
CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Protein of this family often fused to HTH domain; Some proteins could have an additional fusion with RecB-family nuclease domain; Core domain appears to have a Rossmann-like fold; loosely associated with CRISPR/Cas systems; also known as TM1812 family
Statistics
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PSSM-Id: 187799
Aligned: 5 rows
Threshold Bit Score: 229.705
Created: 5-Feb-2010
Updated: 2-Oct-2020
Structure
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Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Q59068         4 VLISPLGvgdtntdvykrqYKTAEYKfegDIDGIESPfvlsvliekl---kvdkvivvgTAKSMWEKLYEYYakevgefD 80  Methanocaldococ...
BAC97576       3 TFVTFIGrgqqdrssevkrYQTAVYQ---FEDGSLTPpvtfvgktliehlapqkvivagTSGSMWDELCPEGl------S 73  Vibrio vulnific...
CAD84026       3 TLISFLGkgiad---kttgYRTATYR---FDDDSKHTtpyfglalagy-lrperlilvgTAGSMWDVFFEQQd-----aS 70  Nitrosomonas eu...
BAD01963       2 KIISFLGfn---------nYQTTTYVh-pTNPEITCK----------------------TRFFQEALVDFYRp------T 43  Synechocystis s...
YP_003249635   5 IFVSFLGlt---------dYKLAVYK---SWRGEGCAs--------------------eTRFVQKAIVELYP-------K 45  Fibrobacter suc...
Q59068        81 EEYWIEIGKKVGMSKYDNYALSEEDLkkie-kviDKYLKKINPNAVGGSkckiikygidkdeiwENFDLFMSLINEVNDG 159 Methanocaldococ...
BAC97576      74 EDFHLLLMERADQQSVDHVLLKELQDtlnhssigPRFHLVLLPDSASES---------------QQVAFFSAITEHIDHH 138 Vibrio vulnific...
CAD84026      71 DDDVLALIDAVRESRVDADMLSAQEKrltk-rlgLPVICRLIPYARDAA---------------EQTEVLLTLAKLVHRS 134 Nitrosomonas eu...
BAD01963      44 EIYVLLTKTVATVAPRGAEVTNWQGLqdcladkvTIRPIEDIPEGSAPE---------------DLWDIFDCITDCLDHG 108 Synechocystis s...
YP_003249635  46 TDLDKIVIFVTKESREKNEQALLEDLkel---gvEPEKIETELISVDVSdl------------sLTWNWFESLQSKFEKG 110 Fibrobacter suc...
Q59068       160 DEIYLDITHSFRSIPLFMYVMLEFMRYFKNVKLKGIYYGMLDVIRElghAPVVDLSPIFEISEWIRGMYEFTTYGNSYLI 239 Methanocaldococ...
BAC97576     139 DVITLDITHGFRFMPILAFACIQFLQFVKRVEVDDLLYALLRFNQP---SPICSLKQLLEIGKWVNALGQFDHSGDLRVF 215 Vibrio vulnific...
CAD84026     135 EEVFLDVTHGFRHLPMLALVAARYLAHVKDVKVRGLYYGALEMTSTngeTPVLQLDGMLQMLDWVESLATYNKDGDYGVF 214 Nitrosomonas eu...
BAD01963     109 DRVIFDFTHGYRFLPVVALLAISYLRTVRQVQVEGVLYGAFDPNSQgesSPTYDLLPMLSLLDWLAATDRFVNLGDGLPL 188 Synechocystis s...
YP_003249635 111 DTLVLDVTHGFRMVPVVFSAAVAYLKRVKNVHLESVLYGAFEMKVDa--KPIVNLKDFYTISDWTEGVGRLVDTADASFL 188 Fibrobacter suc...
Q59068       240 SKLLE 244 Methanocaldococcus jannaschii
BAC97576     216 ESLLE 220 Vibrio vulnificus YJ016
CAD84026     215 ASLLQ 219 Nitrosomonas europaea ATCC 19718
BAD01963     189 AQLLQ 193 Synechocystis sp. PCC 6803
YP_003249635 189 RKTAE 193 Fibrobacter succinogenes subsp. succinogenes S85
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